LOC120547009


Basic Information

Item Value
gene id LOC120547009
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15257133 ~ 15264717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637012.1
CTCAGTTGGATTcagaagagagagaaggctGCTGCAGGCTGGAGAGACGTGGTGTTTTCCCACAACACAAACTTTTGTAAATATACCTTTTTTAAAACCTGAACTACACATTGGAGCAGCTGGAGCTGCACCCCCGGGTGTTGGCAGTCTTGACTAAGGAATGCTAGGATGCCGACCTGGAGATTGCTCAAGACGGCGTGGTCATTGAGTCAGTAGGCCCGTCGTGAATAAAACAACTTCGTGGCTCTTCTTCCCTCTGCTTTACTCTGTGCATAGATCAACTGGACGACAAGACACAAAAGAGAGCTACGGTCTGAATTAAAATCAGGGTGCCATTATCTGATGATAAAAGCCATGTCCAGAGGAATGTCACCCATTAACCGTGCCAACTGTCGATGGAGTCAAGAATCCCCTGCATGTTTGTCTGCAACTGACCCGGTCTGAACCCTCCACCATTCCACCAGGCTATCGGCGTGAGTAGGCGAGGAGAGATGGCCACATCGAGGCTGCTAAAAGGCTCGCTCCCAGTGCTGCGTGACGGCTTCCTCCATTCACATCTCTCCTGTTCTTATATCTCTTCGTtctgtttttctcctctttgcttccccctctctctgttaCGCTTGCTGCTGTGTTTCTTCTGTTCGTGCCTTCTCTGTTCTCTCCATGCCTGCTCATAATCTTGTCTTGCAAAAAGGGTTCTTCTTTCTCATTCCTTTTCAGTTTCTTCGTGGACTCTGCAGACCCTCGCTTGCCATTTCAGTTCACTTTCTCAAGCACTTCCGGTGGCCTGGCCTGTTATTTCTCCTTTGAACAAAGAATGCTACTGTTAAAAGACTTCTAAATCAGTATTACTAATCAGTATTTGAGGTGAGAGGTAGTGGATTCCCCTCATTCTGTGCATGCTGGTATGGGTGGTCTGGCTTCCTGGTTCAGAAGCCAATGCAAGATTTGTGTAAAGTGATGTGTTCTCAATCTGAGAAGTGTGGGTCTCAGGCTTTGATGCTAAACCTTCTCTCTTCACTTCCTTCTAGGCATCCGATGATCTAATTAACATACTGTATTATTATCGCCTAACTCACAGCAATTTTAGACTTTGATCCTTGATCCATGTGTGAGCTGTCCTTTTGTCACATACTCTTGGCCAGTTTCTTGGTCTTTTGCTCCCAATACAGATGTTAAACCACATTCTTGTGTGTAAACCTATGGCTACcttattttatttctctctgttaACTAAAGCCGGATCTACTTGGGCCCTGTTTGGGAGAATTCTCCTTCTGAATAGTTTCTTCTTATCAGCTAATAGCCTGCTTCCCTGTCTGCCTCCAGCCTGTGTACCATATGTTATCTTCTATACCAGATCAAATGACATTAGGCTGAAACAATCACGAAAATGTCTCCAACATTTTTCATTCTTAAGTGCTGCATTATTGCTGGCCCCTCAGCTGTCCTCTGTTACAGAGACATAAGTCATGCTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637012.1 True 1484 lncRNA 0.45 3 15257133 15264717

Neighbor

gene id symbol gene type direction distance location
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding upstream 83551 15142703 ~ 15173582 (+)
hsp90aa1.2 LOC107100300,LOC103369947,LOC105919227,LOC103155532,LOC103457915 coding upstream 115740 15135367 ~ 15141393 (+)
mgat2 mgat2 coding upstream 140349 15113170 ~ 15116784 (+)
LOC120546410 NA coding upstream 302217 14938918 ~ 14954916 (+)
faua fau coding upstream 554980 14699966 ~ 14702153 (+)
slc25a29 LOC103369942,LOC106518591 coding downstream 12868 15277585 ~ 15286851 (+)
vrtn vrtn coding downstream 31564 15296281 ~ 15300707 (+)
dll4 dll4,LOC104955063 coding downstream 323366 15588083 ~ 15597893 (+)
chac1 chac1 coding downstream 337618 15602335 ~ 15604166 (+)
zfyve1 LOC100698556 coding downstream 415744 15680461 ~ 15687727 (+)
G184431 NA non-coding upstream 54618 15202306 ~ 15202515 (+)
G184419 NA non-coding upstream 83003 15173690 ~ 15174130 (+)
G184389 NA non-coding upstream 145528 15110243 ~ 15111605 (+)
G184390 NA non-coding upstream 147056 15109634 ~ 15110077 (+)
G184345 NA non-coding upstream 589546 14667226 ~ 14667587 (+)
G184461 NA non-coding downstream 55301 15320018 ~ 15320239 (+)
G184463 NA non-coding downstream 57029 15321746 ~ 15322122 (+)
G184465 NA non-coding downstream 57858 15322575 ~ 15322888 (+)
G184474 NA non-coding downstream 213774 15478491 ~ 15479080 (+)
G184481 NA non-coding downstream 228487 15493204 ~ 15493527 (+)
hsp90aa1.1 LOC103369948 other upstream 122273 15129476 ~ 15134860 (+)
G184258 NA other upstream 727763 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 832269 14393440 ~ 14424864 (+)
G184231 NA other upstream 875946 14362341 ~ 14381187 (+)
LOC120546742 plcb1 other upstream 1116364 14024484 ~ 14140769 (+)
LOC120546207 NA other downstream 24957 15289674 ~ 15293252 (+)
G184458 NA other downstream 37208 15301925 ~ 15318836 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other downstream 395856 15660573 ~ 15663661 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 430227 15694944 ~ 15719632 (+)
LOC120546249 NA other downstream 649869 15914586 ~ 15968123 (+)

Expression


Co-expression Network