trnat-ugu_2


Basic Information

Item Value
gene id trnat-ugu_2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12583169 ~ 12583241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1080
GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1080 True 73 tRNA 0.59 1 12583169 12583241

Neighbor

gene id symbol gene type direction distance location
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding downstream 224938 12027548 ~ 12358231 (-)
tshr tshr coding downstream 665028 11893534 ~ 11918141 (-)
kcnk13b kcnk13,LOC106526329 coding downstream 910080 11659994 ~ 11673089 (-)
LOC120547092 psmc1 coding downstream 933109 11638846 ~ 11650060 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding downstream 948839 11619704 ~ 11634330 (-)
ccnk ccnk coding upstream 112696 12695937 ~ 12703184 (-)
LOC120546273 NA coding upstream 163145 12746386 ~ 12747738 (-)
LOC120547205 NA coding upstream 363717 12946958 ~ 12948322 (-)
LOC120547206 NA coding upstream 373232 12956473 ~ 12957811 (-)
LOC120547207 NA coding upstream 395422 12978663 ~ 12979999 (-)
G183898 NA non-coding downstream 23394 12540583 ~ 12559775 (-)
G183875 snw1,LOC102781075 non-coding downstream 61415 12518372 ~ 12521754 (-)
G183872 NA non-coding downstream 78154 12504685 ~ 12505015 (-)
G183870 NA non-coding downstream 102239 12480533 ~ 12480930 (-)
G183813 NA non-coding downstream 557670 12002717 ~ 12025499 (-)
G183910 NA non-coding upstream 4897 12588138 ~ 12630792 (-)
G183908 NA non-coding upstream 9377 12592618 ~ 12626706 (-)
G183952 NA non-coding upstream 257791 12841032 ~ 12922807 (-)
LOC120546274 NA non-coding upstream 301129 12884370 ~ 12885775 (-)
G183981 NA non-coding upstream 451011 13034252 ~ 13034497 (-)
G183650 NA other downstream 1208554 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 1972544 10455244 ~ 10610625 (-)
G183528 NA other downstream 2061759 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 2482108 10099478 ~ 10101061 (-)
G183176 NA other downstream 3449697 9129573 ~ 9133472 (-)
ost4 NA other upstream 324061 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 377257 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 562223 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 672644 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 875361 13458602 ~ 13468065 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06536391_06539967 INO80C coding CI01000027 null 6536340 ~ 6540239 (-)
striped catfish (Pangasianodon hypophthalmus) trnat-ugu_12 NA coding NC_047604.1 CM018550.1 26915358 ~ 26915430 (+)
tiger barb (Puntius tetrazona) trnat-ugu_53 NA coding NC_056718.1 CM032087.1 4589736 ~ 4589808 (+)
mexican tetra (Astyanax mexicanus) trnat-ugu_82 NA non-coding NC_035905.1 CM008308.1 37598177 ~ 37598249 (+)
mexican tetra (Astyanax mexicanus) trnat-ugu_12 NA coding NC_035899.1 CM008302.1 6925664 ~ 6925736 (-)