trnat-ugu_4


Basic Information

Item Value
gene id trnat-ugu_4
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30373666 ~ 30373738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1091
GGCCTCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1091 True 73 tRNA 0.56 1 30373666 30373738

Neighbor

gene id symbol gene type direction distance location
galnt14 galnt14,LOC103365833,LOC102790467 coding upstream 50322 30125463 ~ 30323344 (+)
zfand3 zfand3,LOC104930467,LOC103365830,LOC101473384,LOC100698322,LOC106531772 coding upstream 257861 30099959 ~ 30115805 (+)
LOC120546869 NA coding upstream 290603 30028950 ~ 30083063 (+)
LOC120546436 NA coding upstream 351024 30012155 ~ 30022642 (+)
LOC120546870 NA coding upstream 429833 29895425 ~ 29943833 (+)
LOC120546909 NA coding downstream 296018 30669756 ~ 30673973 (+)
LOC120546901 NA coding downstream 441115 30814853 ~ 30821281 (+)
LOC120546904 NA coding downstream 453021 30826759 ~ 30830636 (+)
LOC120546903 NA coding downstream 463993 30837731 ~ 30850277 (+)
LOC120546902 NA coding downstream 471317 30845055 ~ 30850277 (+)
G188355 NA non-coding upstream 19029 30348075 ~ 30354637 (+)
G188347 NA non-coding upstream 254625 30116710 ~ 30119041 (+)
G188345 NA non-coding upstream 274252 30099100 ~ 30099414 (+)
G188344 NA non-coding upstream 275318 30097726 ~ 30098348 (+)
G188294 NA non-coding upstream 300925 30071009 ~ 30072741 (+)
G188363 NA non-coding downstream 19444 30393182 ~ 30398950 (+)
G188365 NA non-coding downstream 27983 30401721 ~ 30430492 (+)
G188367 NA non-coding downstream 37885 30411623 ~ 30435797 (+)
G188374 NA non-coding downstream 103019 30476757 ~ 30545263 (+)
LOC120546896 NA non-coding downstream 125616 30499354 ~ 30501244 (+)
angel2 NA other upstream 37464 30324972 ~ 30336202 (+)
btbd9 btbd9 other upstream 276427 30084548 ~ 30097239 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other upstream 727843 29645254 ~ 29645823 (+)
G188268 fabp7,LOC105924611,LOC105419070,LOC101079341,LOC102793361,LOC107727581 other upstream 909792 29461849 ~ 29463874 (+)
G188207 clvs2,LOC107675107 other upstream 952939 29419376 ~ 29420727 (+)
G188352 NA other downstream 237943 30611681 ~ 30882446 (+)
LOC120546905 NA other downstream 420481 30794219 ~ 30812452 (+)
hivep2a LOC103373864 other downstream 795329 31169067 ~ 31309396 (+)
LOC120546816 NA other downstream 1232316 31606054 ~ 31614522 (+)
LOC120546196 LOC105017826 other downstream 1403225 31776963 ~ 31782066 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnat-ugu-38 NA coding NC_048582.1 CM023236.2 23641871 ~ 23641943 (-)
striped catfish (Pangasianodon hypophthalmus) trnat-ugu_7 NA coding NC_047598.1 CM018544.1 27621056 ~ 27621128 (-)
tiger barb (Puntius tetrazona) trnat-ugu_49 NA coding NC_056714.1 CM032083.1 16990302 ~ 16990374 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_7 NA coding NC_035899.1 CM008302.1 6923067 ~ 6923139 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_80 NA coding NC_035899.1 CM008302.1 6988739 ~ 6988811 (-)