G191565 (sptbn1)


Basic Information

Item Value
gene id G191565
gene name sptbn1
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2756154 ~ 2761679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU260161
gtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagtgtgtgtgtctctgtgtgagtgtgtgtttgtatgtgtgtgtgtgtgtgtttacctccTGGCAGTCCTGCAGGAACTTCTGCAGGTCTCTGTTGTCCTTCAGCCTCGTCAGCAGCTCGCTGGCAGCCGCTCGGTTCTTCTTATGTCTTTGGTCGATGGAGTCCACCTTCTCCTGGATGCGCTCGGCGTTGATGTTGCCGTCGGTTACCAGGCGGCGTCCGGTGTCGAGCACGCCGCTGATCTTCTCCTCGTTGGCGTCCAGCGTGGTCATGAAGTCCTCCTGCTTCTTGATGGCGGCCTCGGCCCCCTCCAGAGTGGTGGGCATCTCGGTGTGAGCCAGGACGTACTcCTGGTTGTTGAGGAAGGCCTCGGCCTGCTTGGTGTCCCTGAGGAACAGCTGGTAGGCGTGCGACTGGGACAGCAGGTTCTGCCGGTTCTCCCACATCTTGTGCAGCTCGTTCCAGCCGGTGTCGAGCGCCTGCAGCCGCTGGCGCAGGAACATGTACTGCGCGTCCGTCTGGCCCTGCGTCACCATCTCGCCCATGTCCCGCATCTTCTGGTAGTCCTCTTCGTAGTTGTGGATTTCGTTCTTGATGTTCTCGTGCTGGGTCAGCAGCTTCTCGGCCTCGGCCAGCGTGTTGGGCATGTCCTCCGAGGCGATGGCGGTCTGCGTGCGCGACAGCCACGACTGGAAGTCGTCCAGCTCGCGCAGGAACTGCTGCAGCTTGCTGGCCTCGCCCAGAGACTCCTCCCGGTTCTTCATGGTGTC

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260161 True 830 TUCP 0.60 3 2756154 2761679

Neighbor

gene id symbol gene type direction distance location
LOC120548306 NA coding upstream 92476 2657857 ~ 2663678 (+)
LOC120548433 NA coding upstream 118878 2529180 ~ 2637276 (+)
rps27a rps27a coding upstream 247773 2504767 ~ 2508381 (+)
LOC120548117 LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 coding upstream 555697 2193300 ~ 2200457 (+)
trnat-agu_15 NA coding upstream 634689 2121392 ~ 2121465 (+)
LOC120548310 NA coding downstream 67380 2829059 ~ 2829748 (+)
znf365 znf365,LOC100708019,LOC101465348,LOC102787219 coding downstream 362088 3123767 ~ 3137751 (+)
trnar-acg_20 NA coding downstream 388135 3149814 ~ 3149886 (+)
trnah-gug_17 NA coding downstream 388794 3150473 ~ 3150544 (+)
adob ado,LOC107097159,LOC103372108 coding downstream 411926 3173605 ~ 3176172 (+)
G191560 LOC108247402,LOC107090937 non-coding upstream 16101 2738144 ~ 2740053 (+)
G191556 LOC104953499 non-coding upstream 30629 2716036 ~ 2725525 (+)
G191555 NA non-coding upstream 48223 2703198 ~ 2707931 (+)
G191548 NA non-coding upstream 55707 2697963 ~ 2700447 (+)
G191340 NA non-coding upstream 112700 2642020 ~ 2643454 (+)
G191568 NA non-coding downstream 56305 2817984 ~ 2835208 (+)
G191581 NA non-coding downstream 63992 2825671 ~ 2894205 (+)
G191582 NA non-coding downstream 73955 2835634 ~ 2895066 (+)
G191583 NA non-coding downstream 80513 2842192 ~ 2843011 (+)
G191588 NA non-coding downstream 121304 2882983 ~ 2883352 (+)
LOC120548303 usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 other upstream 439752 2268828 ~ 2316402 (+)
G191236 NA other upstream 651457 2047957 ~ 2104697 (+)
G191230 NA other upstream 751926 2002812 ~ 2004228 (+)
G191212 NA other upstream 806920 1948390 ~ 1949234 (+)
G190785 NA other upstream 976172 1701556 ~ 1779982 (+)
G191567 sptbn1 other downstream 371 2762050 ~ 2766062 (+)
G191571 NA other downstream 8954 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other downstream 13629 2775308 ~ 2778367 (+)
LOC120548437 NA other downstream 332288 3093967 ~ 3110958 (+)
LOC120547552 NA other downstream 402145 3163824 ~ 3339085 (+)

Expression


Co-expression Network