G191567 (sptbn1)


Basic Information

Item Value
gene id G191567
gene name sptbn1
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2762050 ~ 2766062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU260163
CTTCATCTCGTCCCAGACGCCGGTGATCTCAGCCAGACGTCCCTTGATGGCGTCGGACTGTTCCGGGTGTTCGGAGGCCAAACGCTCCGCCTCTTTGCCCAGGTCGCCCAGCTTGTCTTCGATGGCGGCGAGGTCGCGCTCCATCCCCGTcagcttcctctgcagcgccATGACGCCGGCCAAGTCGTTCCCCAGCTCCTGGGTCGACTCGATCACCTTGGTCTTCTCTTTGATCCAGGACTTGGTCTCGTTGCACTCCAGGTGGTAGTTCTGGACGCCCAGAGCCGAGCTCAGACTGTCTTTCTTCTGGTCCACCAGGTCTCGGAACTGACTCCACCTGGTGTTGAGTTTGTCCTGCTGGGCTTTGATCTCCTTTTCGCTGGGATGTCCGCTGTGGATCAGTTGCCTGGCGACCTGGTTCACCACGGCGACCCGGGACGCCTGGTTGTTCATCTCTGGCTCCAAACTCTCAAAGCGGTGCTGGACCACCTCCAGGTCCTCCAGTTTCTCGGGGATGTCCATGCTGTTGAGCCACTGCTCCTTCTCGTCGATCCACACCTCGCAGGCGCTGGCTTCGCTCAGCATCTTGTAGAGCGCCAGAGCGTCCTGCAGCGCCTGCTTCCTGAGCCGCGTCAGCTCCACCACCTCCTTATAGCGCTCCTCGATGCCCGCCAGGCGGCTCTGGAC

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260163 True 687 TUCP 0.61 4 2762050 2766062

Neighbor

gene id symbol gene type direction distance location
LOC120548306 NA coding upstream 98372 2657857 ~ 2663678 (+)
LOC120548433 NA coding upstream 124774 2529180 ~ 2637276 (+)
rps27a rps27a coding upstream 253669 2504767 ~ 2508381 (+)
LOC120548117 LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 coding upstream 561593 2193300 ~ 2200457 (+)
trnat-agu_15 NA coding upstream 640585 2121392 ~ 2121465 (+)
LOC120548310 NA coding downstream 62997 2829059 ~ 2829748 (+)
znf365 znf365,LOC100708019,LOC101465348,LOC102787219 coding downstream 357705 3123767 ~ 3137751 (+)
trnar-acg_20 NA coding downstream 383752 3149814 ~ 3149886 (+)
trnah-gug_17 NA coding downstream 384411 3150473 ~ 3150544 (+)
adob ado,LOC107097159,LOC103372108 coding downstream 407543 3173605 ~ 3176172 (+)
G191560 LOC108247402,LOC107090937 non-coding upstream 21997 2738144 ~ 2740053 (+)
G191556 LOC104953499 non-coding upstream 36525 2716036 ~ 2725525 (+)
G191555 NA non-coding upstream 54119 2703198 ~ 2707931 (+)
G191548 NA non-coding upstream 61603 2697963 ~ 2700447 (+)
G191340 NA non-coding upstream 118596 2642020 ~ 2643454 (+)
G191568 NA non-coding downstream 51922 2817984 ~ 2835208 (+)
G191581 NA non-coding downstream 59609 2825671 ~ 2894205 (+)
G191582 NA non-coding downstream 69572 2835634 ~ 2895066 (+)
G191583 NA non-coding downstream 76130 2842192 ~ 2843011 (+)
G191588 NA non-coding downstream 116921 2882983 ~ 2883352 (+)
G191565 sptbn1 other upstream 371 2756154 ~ 2761679 (+)
LOC120548303 usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 other upstream 445648 2268828 ~ 2316402 (+)
G191236 NA other upstream 657353 2047957 ~ 2104697 (+)
G191230 NA other upstream 757822 2002812 ~ 2004228 (+)
G191212 NA other upstream 812816 1948390 ~ 1949234 (+)
G191571 NA other downstream 4571 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other downstream 9246 2775308 ~ 2778367 (+)
LOC120548437 NA other downstream 327905 3093967 ~ 3110958 (+)
LOC120547552 NA other downstream 397762 3163824 ~ 3339085 (+)
arfgef3 arfgef3,LOC102791283 other downstream 1484543 4250605 ~ 4347579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013560 sptbn4,LOC107602096,LOC103155361 misc CM030125.1 CM030125.1 36060755 ~ 36085843 (+)