G191573 (sptbn1,LOC107396444)


Basic Information

Item Value
gene id G191573
gene name sptbn1,LOC107396444
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2775308 ~ 2778367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU260196
GTCGGAGATGAGTTTGCCCTCTCGGGGAGTGTAGACCTTCTGGTTGTTGGCTCTCATCTTGCTCTGGATGGTGAACAGAAGAACCTCCAGGTTCCCCTTCTCTGTGAacTTTGGCGGTTTCTCCACCGTGCGGTACGTGTTGAAggcctgcagctgctgctggacGCCCACCAGAGAGTTGGCGAACTTCCTGTTGTTGAGGATGATGATGGTCTGCTCGATCCACTCCAGCAGGTCCGACGCCAGAGACTCGTACTTCTCGATCATCTTCTCCGTCTCGATGGCGTTGTCCAGAACcTTTCCGATTCTCTTCCCCTCCACCTTCAGCGCCTTCATCTTGGAGAAGTAGTGGTAGTAGGTGAC

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260196 True 363 TUCP 0.55 3 2775308 2778367

Neighbor

gene id symbol gene type direction distance location
LOC120548306 NA coding upstream 111630 2657857 ~ 2663678 (+)
LOC120548433 NA coding upstream 138032 2529180 ~ 2637276 (+)
rps27a rps27a coding upstream 266927 2504767 ~ 2508381 (+)
LOC120548117 LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 coding upstream 574851 2193300 ~ 2200457 (+)
trnat-agu_15 NA coding upstream 653843 2121392 ~ 2121465 (+)
LOC120548310 NA coding downstream 50692 2829059 ~ 2829748 (+)
znf365 znf365,LOC100708019,LOC101465348,LOC102787219 coding downstream 345400 3123767 ~ 3137751 (+)
trnar-acg_20 NA coding downstream 371447 3149814 ~ 3149886 (+)
trnah-gug_17 NA coding downstream 372106 3150473 ~ 3150544 (+)
adob ado,LOC107097159,LOC103372108 coding downstream 395238 3173605 ~ 3176172 (+)
G191560 LOC108247402,LOC107090937 non-coding upstream 35255 2738144 ~ 2740053 (+)
G191556 LOC104953499 non-coding upstream 49783 2716036 ~ 2725525 (+)
G191555 NA non-coding upstream 67377 2703198 ~ 2707931 (+)
G191548 NA non-coding upstream 74861 2697963 ~ 2700447 (+)
G191340 NA non-coding upstream 131854 2642020 ~ 2643454 (+)
G191568 NA non-coding downstream 39617 2817984 ~ 2835208 (+)
G191581 NA non-coding downstream 47304 2825671 ~ 2894205 (+)
G191582 NA non-coding downstream 57267 2835634 ~ 2895066 (+)
G191583 NA non-coding downstream 63825 2842192 ~ 2843011 (+)
G191588 NA non-coding downstream 104616 2882983 ~ 2883352 (+)
G191567 sptbn1 other upstream 9246 2762050 ~ 2766062 (+)
G191565 sptbn1 other upstream 13629 2756154 ~ 2761679 (+)
LOC120548303 usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 other upstream 458906 2268828 ~ 2316402 (+)
G191236 NA other upstream 670611 2047957 ~ 2104697 (+)
G191230 NA other upstream 771080 2002812 ~ 2004228 (+)
LOC120548437 NA other downstream 315600 3093967 ~ 3110958 (+)
LOC120547552 NA other downstream 385457 3163824 ~ 3339085 (+)
arfgef3 arfgef3,LOC102791283 other downstream 1472238 4250605 ~ 4347579 (+)
G191903 NA other downstream 1509530 4287897 ~ 4288644 (+)
LOC120548449 NA other downstream 1588784 4367151 ~ 4368326 (+)

Expression


Co-expression Network