LOC120548511 (LOC101485366,LOC100693926)


Basic Information

Item Value
gene id LOC120548511
gene name LOC101485366,LOC100693926
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4629057 ~ 4678348 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU260709
CTGAGACAAATATGGTTGCAAAAATGATTGTTACGTGACGGTTTCATTCGAGATAAATTCAGTGTAAACTTTGCAGAAGCAGACGAACGCGGCGGTACAATGGCAGGAGAAGAGCAGGAGAGCAAGACCAAGGGTTTCCGGCTGCTGGGGATTCTGGATGTCCAGAACACTCCGTGTGCCAGAGACGCCATCCTGCATGGAGCTGGGGGCTCTCTAGCTGCTGGCCTGCTACACTTTCTGGCCACTAGTTTTACTGCAGGATGAACAACGCTAAGCTCCGTGTGCAGCAGAGGATGATCCAGGACGGCATCAAGAACAAGGTTGTGTACGAGGGGTCCGTTCTAGACCCAACAAACAAACCTGGAGCGCCAGGGCCCTCGTGACCCTGATGGGGGAGAAGAGAGGACACCGTCAGGGCCCTACAAAGACATAACATTCAGTTGATTTTTGCTGCACAAATTGTGGAAGGGACAAAAAATCCaggatgtctttttttttttttttttttgtgcggttttgttttgtctgacaaCGTAGGATACAGCAAATCCACAGCATTGGATCTCGTATTCCCCCCCGCATATGGACTTTTTGACTGAAGAGTAGGCTGTTGTTCCTAAATGGTATCCTGAtcctgaaacaacaacaacaattattatttagaaTGTTGTTCCACCAACATATACCAAGCTACTGTACAAGTTAAATTCTCACTCTCCTTTAAAACCCTGTGATGCATGACGTGCTGTGATGAAGTCTGTTCTGGACACAGATCTACCGCTACTTAGTGACACGTAACCAGTGTGATACAgcagactgccgtccgctgtatacagcatagaTATACGAgaatagctcaaaatgcgtacaggtaacacgccacttggctttaggaaagtggcgttgggaaccactggcgtAATGCATACTGTAACTCTCTCAAATGCTTTTTATTTGAAGTATCGTTATTCTACAAGTTGGTATATTCCACACTTAGCGTGGAAATGTTCTGACACATTACATACGTACACATCTGTGTGTACGCACGGTTGacaaatgaggcccctggagtGTAAACTGATTTGACTGTAAGTCAGCCTGGATAGATGTGTCTGCTACATGTCTGTCTTTATTTAGGTTTGGTTCACAGTTGTCTGACCAGCAGCAGGTGTCACTACATCCACCCTGTGATAGTGCCACTCAATCAGCACCACCATGCGCCACTTGTGCCCGCCAGTTCATCTCGTCTCAAGAATGAACTCAACTTCAACCATCTCATActtgtgtaaaatgtattttaaattggcCTCGATTACAACATAGGTTGACGAGCTTCATTGTCTTTCCTTTTGATCTCTGAAGTTCC
>TU260710
ggATGACAACTTTTGACAATTTTATAGAGGAACTACTGTCTACTTCAACCGTGTTCACATTTCGAGTCGGCGATTAATAGCGGACGGACCCATTTGAAGCAGACGAACGCGGCGGTACAATGGCAGGAGAAGAGCAGGAGAGCAAGACCAAGGGTTTCCGGCTGCTGGGGATTCTGGATGTCCAGAACACTCCGTGTGCCAGAGACGCCATCCTGCATGGAGCTGGGGGCTCTCTAGCTGCTGGCCTGCTACACTTTCTGGCCACTAGTTTTACTGCAGGATGAACAACGCTAAGCTCCGTGTGCAGCAGAGGATGATCCAGGACGGCATCAAGAACAAGGTTGTGTACGAGGGGTCCGTTCTAGACCCAACAAACAAACCTGGAGCGCCAGGGCCCTCGTGACCCTGATGGGGGAGAAGAGAGGACACCGTCAGGGCCCTACAAAGACATAACATTCAGTTGATTTTTGCTGCACAAATTGTGGAAGGGACAAAAAATCCaggatgtctttttttttttttttttttgtttttttttttaggtaggTACATGGTGGGATTGGACATCGATAACCAgttccaacttggaatcgtttaaaaaattacgattccaatggatttgtttctttatcggaatcgtttggaatatttggtttggaatctgatCATCGGTCAAATTTAACATGCAACaaattttggtttccgtagctgCCAGGCACTTGTtttgttgcagccatggagcacaatAAGTGGcgctctaaagtgtggcttttcaattcaatcaccattgaataaaaaaactgatttcctcttatctgtgaaataggcatgtgacccgtttcaactccacccctcaaagaatcgcaATTGAgcatcgataagaaccggaatcgaaaggaagaattggaatcagaactGTCAAAATAGGgagcctgggtagctcacctggtagagcgcgcgcccatatatagaggtttactcctcgatgcagcagccacaggtttgactccgacctgcggccctttgctgcatgtcattccccctctctctcccccctttcatgtcttcagctgtcctataaaattaaaaaggcctaaaatgcccaaaaaagaactcgtaaaatcaaaacgatgcccaaccttATTACATGGTATTACTTATTACCTCTCATCGTACTATTACCCCACTATTACAGAGCTGTAGTAAAGTGCGACTCAAAAATATACTTGCTCCTTAGTTAAGAAGCCTAAAACACGTATGGTCTATTATGGCAAACATTAAAACTAAAAGTGAAACTTGCATGCAGGAGAGCCCCCAATTTCTTTTCATCCTCACCTCTTAACATCTGTGCAAAACACTGTATTTTATGGTTTACTGTATTGCATGAAGTGTGTGAATTCTACAATATCTAATCACGAGAACCCCTAACGGTGTGTGTCAATCAGATCCTTTGTACAATCTATCAGTTTGGTGAATAAGGCAGGCTTTGTTGCTGGCTATATGAGCTTAATGAAGTAATTGCACAATAAGATTGTGATTGCATGAGCTACGCGTCTGAATGAAGTTGAATAATCATGTTTAGGACAGATTTAAGAAGAGAAGatagaaaaaacaaaacttaaCAATATTTAACTTACAGTAGAGTACATGCATTGCAATATATGTGTATTAGCGTGTCTGTGAGTTGGacaccaacatttttttttaaagaatctgGTAGGTAGAGTAAgaacatgacaaaaaaatgcgGAGAACCAAAGCAGAATTGTAAAGTATCCCGTCGGTTTGGATTCAATAAGGTGTAGGGAGATCTGCTAAAAGCTAAAAGTGTCTTAGTTCAATAACAAAAATAGACTCCtaataataactagaaaataACAATATAATGCATATGTCGTTAAGGTTGACCCAACAGAAGTAATGCTACTGTGAACCGGATGAGAATCTGATTTCTGAATGAACAAACTACAGGCAGTGATGTTACAGTGACTCCGCTGGGATGGATTTGGGCAAGAAGAGGCAGGTTGATGTGTTTCGGTCTGTTTACAGTATGTGGAAGAGGCTTGAGCCGAGTTGGGTATAATTTTGTATTCGGATTCTGCTTATTGATTCTGATTCTCAGCTTTTCTTTTGAGAATGAAATAAAACTTCAATATGACGAAAGAAAACACACCTTAAGTAGGCTTAAAGGTACAGTATGTAATCATTTTGCATTGTACTGACACAGGGACGTTTCGTTTGGTCGGCTCTCAGTGGCGTCATAaaacctttgacccctctagttattctaacttccgtcaaaacACAGGAACCCAGATGATACGTTCGAGAGTAtttcatgattaaaaaaaactattaggGCGGCaactaacttttttttctccattagttgtttggtctataaaaataTCAGAAAGTCGCGACAAAcgtcgatcagtgtttcccgaAACGCAAgaggacgtcctcaaatgtctcgttttgtccacaactcaaagatacgcagttcactgtcacagaggagagaagaaactagaacgtattcacatttaaagctatagtgcgtagtttctgtcgcccccatgaggaattctaagtaatgacaacaaaactgttgttgcaattttttcattaaaaatcactcaaacagattaatcgattatcaaactAGTCGGCGATTCATCATCAACTAATGGATTCATCCTTGCCGCTCTAGCACTATGTGATTTGCATCTGTATCTTCTTGTCATCTTTTTTGGGAATCGATAAGCAGAATCAAAGAGCATGCTTTCCAAAGAATTCTTGGTTTTTCTACATGTATACATTTAAAATGGCTACAATTCAGAACCACTTCATGATACCCAACTCTTGTTCCACTGGAAAAGTGGGCTGGTTCTAATTGCTGGTCAAATGCACAAGGTGAAAGAACACAGTGTCTAGGTAGTATAATACTTCTCTGAGCTAAATGAGTTAGCCTATAAAGAGTTGGGTAGGTCTGGGAACTGAGCTGCATAGAGTTCAAATCAGGGTGTAGGTCTGCGATGGAGACCAGGTCAGGATAAGACACAGGTTGTAGGTTGGAATCCCCCCCCGCCACTAATACCCCTTTTACACCAAAGACCCGAGTTCAGCGGATGTTTCTGAACACAGAGACGTCACCAAACCAGATGACCAGCGATAAATCCAGGTGTCCAGACTTTTTGACACACGTCGGACAGAGTGGTTGCATTATTTTGCCTCTGTTAGTTAATTGTCCTGCGATGACCTTTTTATTTAAGTGGCCCATGTTACGTGTGGGTCGTCTATGTGGTTGTCTCAACGCAGGGCAACTTTTGTACGCTGGTGTTCAACCTGTATCTGATTTTGATAGCTCACTTTGTTTAGGTAGGTCTAGGTACAGAACTATAACAGGACAGGGAAAAGAGAGTGGGGCCGAGCCTTGGAAGCTAAAATAAGGCAGAATGGGATTACGAATACCATTCCTTCTAGGTAGCTCAGCCTCAGGGCTCTCAGACGGCCCCGAGTTTACAAAGGTAAAGACAGGCTTAAGTCTCTGGCTGGGGATTTAAGTCCGGGTCTATGGCGGATTTTAAATCTGGGGCTCTAAGAGGCCTGGTCCAGGGCTCTCAGCAGGTCACAGCCCTGGAGGAGGTGCAGGTTGCCCTGCAGCGGGACGTTGACCTCGCAGTCGTAACCGGTCAACTCCGGCAGACAGGAGGAGTCAAAAGAAGGGCCCACCAAACGACTCGCAATACCTAGAAAGTGcataaaagaaaaggaaagaaaatctGTGTCAATGATTCAATACGAGCAGGCAGGTAGACAGTGTGCAACAGTTAGCAACAATCTTAATTTTAC
>XM_039784789.1
TGGTAGGTACTGCGCATGCGCTGAGACAAATATGGTTGCAAAAATGATTGTTACGTGACGGTTTCATTCGAGATAAATTCAGTGTAAACTTTGCAGAAGCAGACGAACGCGGCGGTACAATGGCAGGAGAAGAGCAGGAGAGCAAGACCAAGGGTTTCCGGCTGCTGGGGATTCTGGATGTCCAGAACACTCCGTGTGCCAGAGACGCCATCCTGCATGGAGCTGGGGGCTCTCTAGCTGCTGGCCTGCTACACTTTCTGGCCACTAGTCGGGTGAAGAGGTCTTTTGACGTGGGATTTGCAGGCTTTATGCTGACGACACTCGGGTCCTGGTTTTACTGCAGGATGAACAACGCTAAGCTCCGTGTGCAGCAGAGGATGATCCAGGACGGCATCAAGAACAAGGTTGTGTACGAGGGGTCCGTTCTAGACCCAACAAACAAACCTGGAGCGCCAGGGCCCTCGTGACCCTGATGGGGGAGAAGAGAGGACACCGTCAGGGCCCTACAAAGACATAACATTCAGTTGATTTTTGCTGCACAAATTGTGGAAGGGACAAAAAATCCaggatgtctttttttttttttttttttgtgcggttttgttttgtctgacaaCGTAGGATACAGCAAATCCACAGCATTGGATCTCGTATTCCCCCCCGCATATGGACTTTTTGACTGAAGAGTAGGCTGTTGTTCCTAAATGGTATCCTGAtcctgaaacaacaacaacaattattatttagaaTGTTGTTCCACCAACATATACCAAGCTACTGTACAAGTTAAATTCTCACTCTCCTTTAAAACCCTGTGATGCATGACGTGCTGTGATGAAGTCTGTTCTGGACACAGATCTACCGCTACTTAGTGACACGTAACCAGTGTGATACAgcagactgccgtccgctgtatacagcatagaTATACGAgaatagctcaaaatgcgtacaggtaacacgccacttggctttaggaaagtggcgttgggaaccactggcgtAATGCATACTGTAACTCTCTCAAATGCTTTTTATTTGAAGTATCGTTATTCTACAAGTTGGTATATTCCACACTTAGCGTGGAAATGTTCTGACACATTACATACGTACACATCTGTGTGTACGCACGGTTGacaaatgaggcccctggagtGTAAACTGATTTGACTGTAAGTCAGCCTGGATAGATGTGTCTGCTACATGTCTGTCTTTATTTAGGTTTGGTTCACAGTTGTCTGACCAGCAGCAGGTGTCACTACATCCACCCTGTGATAGTGCCACTCAATCAGCACCACCATGCGCCACTTGTGCCCGCCAGTTCATCTCGTCTCAAGAATGAACTCAACTTCAACCATCTCATActtgtgtaaaatgtattttaaattggcCTCGATTACAACATAGGTTGACGAGCTTCATTGTCTTTCCTTTTGATCTCTGAAGTTCCGCCCTTACTGTATAAAAATTGAATCGATTTGTGACTTTAAAAATTGTAAGTCAAATCATATTGTGGATATTGAGAATCACGGAACTTCTaataagggttagggttaacaaCTGTCTGTTAATAATGAAATTACATTACAGCAAGTAATGCTACTATTAAAACAATTCTAAGCCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260709 False 1366 lncRNA 0.45 3 4629171 4636348
TU260710 True 3855 lncRNA 0.43 5 4629057 4678348
XM_039784789.1 False 1627 mRNA 0.44 4 4629151 4636525

Neighbor

gene id symbol gene type direction distance location
LOC120547947 NA coding upstream 13096 4613923 ~ 4615961 (+)
LOC120548456 NA coding upstream 27791 4503362 ~ 4601266 (+)
LOC120547943 NA coding upstream 50696 4575583 ~ 4578361 (+)
LOC120547941 NA coding upstream 80283 4544612 ~ 4548774 (+)
LOC120547944 NA coding upstream 117245 4487507 ~ 4511812 (+)
ccdc172 NA coding downstream 712071 5390419 ~ 5427836 (+)
LOC120548190 LOC102080562,LOC102201633 coding downstream 1100841 5779189 ~ 6190313 (+)
setd4 setd4,LOC102797995 coding downstream 1617899 6296247 ~ 6308199 (+)
LOC120548010 itsn1 coding downstream 1689689 6368037 ~ 6377416 (+)
pdxkb LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 coding downstream 1722683 6401031 ~ 6431130 (+)
LOC120547946 NA non-coding upstream 20012 4608142 ~ 4609045 (+)
G191918 NA non-coding upstream 205250 4384230 ~ 4423807 (+)
G191909 NA non-coding upstream 212770 4348505 ~ 4416287 (+)
G191890 NA non-coding upstream 412004 4216818 ~ 4217053 (+)
G191887 NA non-coding upstream 442400 4186404 ~ 4186657 (+)
G191960 epas1a non-coding downstream 44359 4722707 ~ 4760414 (+)
G191962 NA non-coding downstream 48226 4726574 ~ 4773778 (+)
G191981 NA non-coding downstream 151271 4829619 ~ 4830101 (+)
G192035 NA non-coding downstream 204822 4883170 ~ 4883655 (+)
G192037 NA non-coding downstream 205444 4883792 ~ 4884103 (+)
LOC120548449 NA other upstream 260731 4367151 ~ 4368326 (+)
arfgef3 arfgef3,LOC102791283 other upstream 281478 4250605 ~ 4347579 (+)
G191903 NA other upstream 340413 4287897 ~ 4288644 (+)
LOC120547552 NA other upstream 1289972 3163824 ~ 3339085 (+)
LOC120548437 NA other upstream 1518099 3093967 ~ 3110958 (+)
G192040 LOC104951079 other downstream 208028 4886376 ~ 4887023 (+)
atrnl1a LOC102310066,LOC100692310,LOC101487275 other downstream 225374 4903722 ~ 5248736 (+)
si:dkey-22n8.3 LOC103376236 other downstream 1341774 6020122 ~ 6396899 (+)
itsn1 itsn1 other downstream 1646167 6324515 ~ 6360991 (+)
LOC120548025 ppp1r1c,LOC106939859 other downstream 1807233 6485581 ~ 6505851 (+)

Expression


Co-expression Network