Gene
RNA
| Item | Value |
|---|---|
| gene id | G191960 |
| gene name | epas1a |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053130.1 |
| NCBI id | CM020927.1 |
| chromosome length | 36824488 |
| location | 4722707 ~ 4760414 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| epas1a | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within Notch signaling pathway and hematopoietic stem cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including digestive system; gill; head; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in familial erythrocytosis 4; lung non-small cell carcinoma; polycythemia; and pulmonary hypertension. Orthologous to human EPAS1 (endothelial PAS domain protein 1). |
| description |
|---|
| endothelial PAS domain-containing protein 1 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260731 | True | 673 | lncRNA | 0.56 | 3 | 4722707 | 4760414 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120547947 | NA | coding | upstream | 106746 | 4613923 ~ 4615961 (+) |
| LOC120548456 | NA | coding | upstream | 121441 | 4503362 ~ 4601266 (+) |
| LOC120547943 | NA | coding | upstream | 144346 | 4575583 ~ 4578361 (+) |
| LOC120547941 | NA | coding | upstream | 173933 | 4544612 ~ 4548774 (+) |
| LOC120547944 | NA | coding | upstream | 210895 | 4487507 ~ 4511812 (+) |
| ccdc172 | NA | coding | downstream | 630005 | 5390419 ~ 5427836 (+) |
| LOC120548190 | LOC102080562,LOC102201633 | coding | downstream | 1018775 | 5779189 ~ 6190313 (+) |
| setd4 | setd4,LOC102797995 | coding | downstream | 1535833 | 6296247 ~ 6308199 (+) |
| LOC120548010 | itsn1 | coding | downstream | 1607623 | 6368037 ~ 6377416 (+) |
| pdxkb | LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 | coding | downstream | 1640617 | 6401031 ~ 6431130 (+) |
| LOC120547946 | NA | non-coding | upstream | 113662 | 4608142 ~ 4609045 (+) |
| G191918 | NA | non-coding | upstream | 298900 | 4384230 ~ 4423807 (+) |
| G191909 | NA | non-coding | upstream | 306420 | 4348505 ~ 4416287 (+) |
| G191890 | NA | non-coding | upstream | 505654 | 4216818 ~ 4217053 (+) |
| G191887 | NA | non-coding | upstream | 536050 | 4186404 ~ 4186657 (+) |
| G191981 | NA | non-coding | downstream | 69205 | 4829619 ~ 4830101 (+) |
| G192035 | NA | non-coding | downstream | 122756 | 4883170 ~ 4883655 (+) |
| G192037 | NA | non-coding | downstream | 123378 | 4883792 ~ 4884103 (+) |
| G192039 | NA | non-coding | downstream | 125559 | 4885973 ~ 4886225 (+) |
| G192103 | NA | non-coding | downstream | 1082119 | 5842533 ~ 5842887 (+) |
| LOC120548511 | LOC101485366,LOC100693926 | other | upstream | 44359 | 4629057 ~ 4678348 (+) |
| LOC120548449 | NA | other | upstream | 354381 | 4367151 ~ 4368326 (+) |
| arfgef3 | arfgef3,LOC102791283 | other | upstream | 375128 | 4250605 ~ 4347579 (+) |
| G191903 | NA | other | upstream | 434063 | 4287897 ~ 4288644 (+) |
| LOC120547552 | NA | other | upstream | 1383622 | 3163824 ~ 3339085 (+) |
| G192040 | LOC104951079 | other | downstream | 125962 | 4886376 ~ 4887023 (+) |
| atrnl1a | LOC102310066,LOC100692310,LOC101487275 | other | downstream | 143308 | 4903722 ~ 5248736 (+) |
| si:dkey-22n8.3 | LOC103376236 | other | downstream | 1259708 | 6020122 ~ 6396899 (+) |
| itsn1 | itsn1 | other | downstream | 1564101 | 6324515 ~ 6360991 (+) |
| LOC120548025 | ppp1r1c,LOC106939859 | other | downstream | 1725167 | 6485581 ~ 6505851 (+) |
