rtkn2a (rtkn2,LOC102197450,LOC101474298)


Basic Information

Item Value
gene id rtkn2a
gene name rtkn2,LOC102197450,LOC101474298
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11574398 ~ 11584172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU262190
CTTACTGTGACAACTTTATGACCACTATAGCTGATTTTAAGGGAACAGGATTTTAGGAGCAATTGCAAGCACTAATGTGACTTCTCCATTTCCCAGAGGTCTTAATAATGGAGTGACCTTGGTTTTCAGTGGCTACACAGTACTGTATGTCCAACATTAATTTAACACTGCAGCCTATAAATGCTATGAACATAATCGAATGAATGAGTCTTTTGAGTGGCTCAAATAATGAATGCTCTTGTGTTAGGGTTTTGACCATATCCAATACTGCCAGCCCCTAAATATTTCAACCACTTAACAGTCACGTGTTGAAGACTGGTcttcatactgtaattacacaGAGTGTACAAAACATTAGGTTTACCTACTTTTTCTGAAATTGCCTGGCCAGAGAAAGCAGTATGGTTAAAGCTACAATCCCATTGTTTTTCCCTCACCCTCTGTAATTCTGTTTAATCAAGAGGGGAAGATGGAGATTTGGGGTGAGGCAGATTACAGGAGGATTTAGTTTAAAACCTTGAGAGAAGCGAGAATGGATTGTACAAAAGAGGATGCTGCTCAATATAAGCAGTGTGCTCAGAATGCCAGTGTGTATTGCAAATATTGAGTCATATTGATGTACTGAATATATCTGGAAGTTTCAAGGGTCAAACCTTATTCATTTTTGTGGTTACACCTTGGACTTCATGATAATGGCTAAAATCATCAGAATAATTATATTGCACTTTCTGCATCATCCATCAACCTCTTGGCCATTTTCAGTTAGACTCAGCATTCTAGAGACTAAAGAACATTAAATTACATGCCAATGTTAACTGACAGTTATGGTAAAAGGTAACATTTCTGTAAAGTATTTCGGATTAACTGTGCAGCCCTGGTAAAAGCAGGAAATGTTGCCTCTTTCAATATTAAGCCTGAGGGAGAAATGTACAACTGCTATACTATATGACTAAACAAGGACTGAACATTTTTTATCAGAGCCAAACTAATGAGCCAA
>XM_039784192.1
CTTGTGTATATGACCTGACAATATCGTCATTGCGGCAGATGATGTGTCACAAATCGAACCACCCTATCCGTTGGAGGGGCGGTGGCAGTTGGAGTTGTTGCCTGTTGCTAGCGAATGGACAGACAATATGGACGACCCGCGAGGTGTTCAAACTTCCAAGCGAAACGGGAGTTCCAGGTCGTTTTTATCGGCCGGTTCCGCGGTGGCTATGGAGATTAAACGGAAGAAAATACGACAGAGTACATTATTCCTCCAAACTGAGAACACTAACCTGCAAGAAAAGCTTGACTTTGAGATGAGAATGCGGGAGGGTGCCTACAAGCTGCTGCTCGCCTGCAGTAAGAGAGAACAGGTTCTTAACGCCTCCAAGAACCTGCTGACCTGTAACGCCAGGATCAAGGCTTATCTCACACAGctgcagaagaagaaagaggagcaGGACATGATTGGAAATGTAATGAGATTTTCAGATGACCGTGTGCCCTGTAATGGAACAATTGCAATGTCTGGGCTGCGCATTCCTTTGATGTGGAGGGATTCAGCCTACTTTAACAACAGAGGGAGCTCCCGTCGAGTGGCCTTGTTCTGTCTGATGCAGATTGGCTCAGAGGTGTTTGACACAGAGATGGTGGTGGTGGACAGATCAGTCACTGATATCTGCTTTGAGACAGTCACTGTCTTTAAAGAAGCAGTTCCTCAATTTGAGCTGAAGGTGGAGTTGTGGAGCTGTGCCCTGGAGGAAGAGCTCACGATGGTAAATACGCCAAAGAAACTGGCCAAGAAGCTCCGCAACTCCTTTGGAAAGACCGCTGGGAAGAAGCTATGCCCTCTGCTGGACAGTCCAGACCCTGACACCTTCCTGCAGTACAACCCTATACCCTTTGGAGCCAAGTACAGCCTGCTGGCCTACACTACACTGTGTCTGCCTGAGGCTGAAGGCAGCTTTCAGTCTCACTCCCTCATTGTCCTCCAAGACGCTGAGTGGTCATCCTGGCTTCCCCTTTATGGCAACCTCTGCTGCCGGTTGGTGGCCCAGCCTGCCTGCATGACACAGAGCATGATGACTGGCTACCTGAGCCAGAAGCAAAGTGTGGAGGGGATGTACCGCTGCTGCAGTCTTTACTGTGTGCTGAGTTCTGGCTTATTGTCCTGTTACTTCACCCCGGAAGAAATTGATGCTAAAGTGCAGCCCGCTCTCAACGTACCCATCAACAAGGACACCCGGATCCGTGTGATGGAGAAGGAGTCAGCAGGCCAGAAATCCAGAAGTCTGTCCATCATCAACCCTTCACCGGAGGGGTCTGAGACCATCGTCTTCACCACAGAAACCAGCGAGGAGCTGGAGGACTGGCTGGATGCCCTCCACCAGCACCTCTATGATCAGAGTCAGTGGCTGCACTGCTGCAACCAGCTAATGAAGATCGAGGTCGCGTCACCACGGAAACCTTCACTCTTCCTCACCAAGCAGCCTGACTCTGTATACAATGACCTCAGCATAAATTCACCTGGCAAGTTTGAAAGCATCACAGACATGATCCACAACAAGATAGAGGAGACAGATGGCCACTTTCTTATTGGTCGTGAAGAGGAGAAGGAAGCGCCGAATTGGTCCACCCTGTTTGACGGGTCCCATTCAATGGTAGTGCAGAAGGGTATTCTGTCCCAGAGCAAAACCTCCACCCCTTGTTCAAGCCCCAATCCCAACACCAGCTCTACATCCATTGGCAACAAGAAGCGCCGTGCCCCACCCCCTCCCTCTGACCGAGAGCCTTATGCTCCTCCCAGCCGCCCTGCCAGACCTCCCcttcctgcttctcttcatcatcatcctcctactcctcctccCTCACACCAGGAGAAGGAGAACTCCGGCACTTGCACTTCCCGCCCGGCCACAAGATCCAAAACTGGCAGACCATCTCTGGATGCCAAATTCTCTGCCATCATTCAGCAGCTCCAGCGGAGCAACGCTGGGGGAGCTGGAGCCCTCAGCCGGAAAAACGCTCCACTGGGCGTCCTCGATGTGCAACCACAAAGTCAGCCTCAGCCTCCTCTCCAGCAGCTGGAGTACCAGACACACCCCACCCAGCACCCTGAAGCCACAGGTGAACATGGCTTCGTCAGACCAAGTCAcggtcctggtcctggtcctgttCCTACACCAAGGAGCAAACTGAGGAAGTCTTTCAGAGAGAGGATGAACCTCAAAGCCCTGTGACCTGGACCTTCGACAACAACTGGATTCAACTAATTAATCCTACCTAGTTACCACTAATACCCCTAACTACAACATTAGTAAGAGCCTTTCAACTGAGCCCTTTAACGTTTataaaatcagatatcacataTATATTTGACTGCACCTCAATAGCAATAATGTGATATTTTGGGCATGACTGTTGGTGTGATCCAACATTTAGAGGAATAGTTCAAACTtttgggatatatatatatatatatatatatataatatatatatatatatgcgcaTGCTTATACAGTATGCTTTCTTGCCTTACATgaaaagatcaataccactctcatatctgtacactaaatatgaagctggagcCAGAAGACGGTTATCTTAGATTgccataaagactggaaaccggGTAAATTGGCTTTTCCCAAAGGTAACAGAATCTGCCTGCCAGCACCGCTAAAGCTCACTTATTAACACGTATCTAATTTttgacaatgtgtttttttttttttttttttttttttatgctttgttttttgtatggaataaataaacaaacaagataacaTATTAATTGGTGACCTTTTTAAAGGTCCTGGTTGGAATACTTTGTTTTCTcgtttggacagagccaggctagcgttttccccctgctttcagtctttatgctgagctaagctaaccggctgtcTTCTTATTGAGCTGATAAATaagagagtggtatcgatcttctcatatttttttccaaaatgttgaccTGTTTCTTCAACCTAAaggatgtgtgtgtgacctgGTCTCTTAAAAAAACCGAACTTCACAATGTCCATCATGACGACCCAAATCCCAGTTGACAGCTCATATCACAATACCAATATTGTATTGATACATTTCCTGCTCCACTCTCCATTTATAAATTCTTTCATGTGCAGCTAGCCCATGGATGAAATTGAAAGCTGTATGTTGGCTTGAACACTGCCATCATCTATTCCACTAAAATGAAAAGGCTTATTTCTCAACTCTGCCACTGGCACATGGAACGAAGAAAGAGCCTTTGCAAAAGCACTTAAATTGGAATTGATCCATTGGCCGACTGTGAACGAGTCATTCCTTTTGGAACTATTGACTTATTCCACTTACTGTGACAACTTTATGACCACTATAGCTGATTTTAAGGGAACAGGATTTTAGGAGCAATTGCAAGCACTAATGTGACTTCTCCATTTCCCAGAGGTCTTAATAATGGAGTGACCTTGGTTTTCAGTGGCTACACAGTACTGTATGTCCAACATTAATTTAACACTGCAGCCTATAAATGCTATGAACATAATCGAATGAATGAGTCTTTTGAGTGGCTCAAATAATGAATGCTCTTGTGTTAGGGTTTTGACCATATCCAATACTGCCAGCCCCTAAATATTTCAACCACTTAACAGTCACGTGTTGAAGACTGGTcttcatactgtaattacacaGAGTGTACAAAACATTAGGTTTACCTACTTTTTCTGAAATTGCCTGGCCAGAGAAAGCAGTATGGTTAAAGCTACAATCCCATTGTTTTTCCCTCACCCTCTGTAATTCTGTTTAATCAAGAGGGGAAGATGGAGATTTGGGGTGAGGCAGATTACAGGAGGATTTAGTTTAAAACCTTGAGAGAAGCGAGAATGGATTGTACAAAAGAGGATGCTGCTCAATATAAGCAGTGTGCTCAGAATGCCAGTGTGTATTGCAAATATTGAGTCATATTGATGTACTGAATATATCTGGAAGTTTCAAGGGTCAAACCTTATTCATTTTTGTGGTTACACCTTGGACTTCATGATAATGGCTAAAATCATCAGAATAATTATATTGCACTTTCTGCATCATCCATCAACCTCTTGGCCATTTTCAGTTAGACTCAGCATTCTAGAGACTAAAGAACATTAAATTACATGCCAATGTTAACTGACAGTTATGGTAAAAGGTAACATTTCTGTAAAGTATTTCGGATTAACTGTGCAGCCCTGGTAAAAGCAGGAAATGTTGCCTCTTTCAATATTAAGCCTGAGGGAGAAATGTACAACTGCTATACTATATGACTAAACAAGGACTGAACATTTTTTATCAGAGCCAAACTAATGAGCCAAATTCATATTAATTTACaatgtttataaaatatgtctCATATCTTTTctgttattaattatatatgaCAGTAATAATTTGTAGTTTTTTTGAATTGTCTTTGATTAAAATGTTCTGTAAATCTTTTTTATAGTATAATACTGCCATGTTATCTCAATATAACTTTCAGCATATATTTAGACTTTAAGTGGcactgtgtttatgtatgtgtaagTAGGGATACATTAATCTTGTCCTAGtgcaaaataatttgtgtatagTGCAATCTaaaaattattgtattttttttgtttctcaaaGTGTAATTTTCTACTCACTCTGTTTTCTTGGAAGCTAACTGTAGTTTTTATTATTGCTGATCTGCAATAAAACGGCCTACATTCTA

Function

symbol description
rtkn2 Involved in negative regulation of intrinsic apoptotic signaling pathway; positive regulation of NF-kappaB transcription factor activity; and positive regulation of NIK/NF-kappaB signaling. Located in cytoplasm and nucleus.

NR:

description
rhotekin-2-like

GO: NA

KEGG:

id description
K24024 RTKN; rhotekin

RNA

RNA id representative length rna type GC content exon number start site end site
TU262190 False 997 lncRNA 0.38 1 11582793 11583789
XM_039784192.1 True 4718 mRNA 0.44 12 11574398 11584172

Neighbor

gene id symbol gene type direction distance location
hint1 hint1,LOC102782004 coding upstream 45171 11527317 ~ 11529227 (+)
abcg5 abcg5 coding upstream 55479 11508095 ~ 11518919 (+)
lrpprc lrpprc,LOC102780371 coding upstream 82080 11434600 ~ 11492318 (+)
znhit2 NA coding upstream 140402 11431298 ~ 11433996 (+)
six2a six2 coding upstream 459593 11111368 ~ 11114805 (+)
LOC120547549 tmem26 coding downstream 85201 11669373 ~ 11679111 (+)
LOC120548093 perp coding downstream 97644 11681816 ~ 11693240 (+)
tnfaip3 tnfaip3 coding downstream 113434 11697606 ~ 11710406 (+)
LOC120547506 NA coding downstream 339922 11924094 ~ 11927433 (+)
LOC120548087 LOC103370708 coding downstream 352153 11936325 ~ 11985948 (+)
G193047 NA non-coding upstream 155296 11394094 ~ 11419102 (+)
G193041 NA non-coding upstream 188073 11383093 ~ 11386325 (+)
G192995 NA non-coding upstream 424190 11146804 ~ 11150208 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding upstream 435032 11135080 ~ 11139366 (+)
G192945 NA non-coding upstream 555467 11018140 ~ 11018931 (+)
G193161 NA non-coding downstream 131044 11715216 ~ 11715850 (+)
G193172 LOC107099926,LOC104931217,LOC103370571 non-coding downstream 202241 11786413 ~ 11791957 (+)
G193213 NA non-coding downstream 403102 11987274 ~ 11991708 (+)
LOC120548033 NA non-coding downstream 423463 12007635 ~ 12017653 (+)
G193295 NA non-coding downstream 593413 12177585 ~ 12178477 (+)
prepl prepl,slc3a1 other upstream 205775 11357040 ~ 11368623 (+)
G192994 NA other upstream 422157 11150319 ~ 11152241 (+)
LOC120548129 LOC107375852 other upstream 617776 10953053 ~ 10956622 (+)
mrpl57 mrpl57 other upstream 983105 10586778 ~ 10591293 (+)
G192834 NA other upstream 1132313 10441527 ~ 10442085 (+)
sdccag8 sdccag8 other downstream 133721 11717893 ~ 11790539 (+)
zbtb18 zbtb18,LOC102787611 other downstream 272815 11856987 ~ 11891203 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other downstream 662779 12246951 ~ 12278375 (+)
sf3b5 sf3b5 other downstream 702841 12287013 ~ 12290530 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other downstream 767151 12351323 ~ 12373271 (+)

Expression


Co-expression Network