LOC120547503 (ankrd1)


Basic Information

Item Value
gene id LOC120547503
gene name ankrd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3813407 ~ 3827078 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782936.1
gacagacagagagacactgaccatCACAGCAGAAGACCAGTGGATATTAAACTACTTCATATCAGGGAGAATAATGGGACTGCACAGTGTTGAGGAACTGGTGTCTGGTAAGAGGTCAGAGGGCAAAGAGGCAGACAACTTCCAAGGTGGCGTGTACGAGGCGGGCGTGGATCAGGAGAAGCAGGATGAGCGCAGGTCCGACAGGGAGCTGGTGGGCGGAGCTCTGTCAGAGGAGAGCGACAGCGGCAGCGAGCACGAGGAAGTCAGCGTGGCAGCTCTTAATACGGATAAAAGCGGCCGGTTGAAGTTGGAGACGGTGGACGACCTGTTCAACATCCTgcagatgaggaagaggagaagggagaGGAAGGCTCCCGTCCATAAGAAACAACAGCCCGAGCCTGAGACTGTGCCAGAGACTGTGGATGAGCAGCTGTTTCTGACAGCAGCCATGGAGAACAAACTGCCTGTTGTGGAGAAGTACCTGAGTGATGGAGGAAACCCCAACGCAGCCGACCACTTCCAGAGAACAGCGCTGCACAAAGCCTCGTTCAAAGGACACGTGGAGGTGATGAGAAGACTCCTGGAGGCCGGCGCTGCCATCGAGAAAAAAGACAAGctGGAGGCCACAGCGGTCCACTGGGCCTGCAGAGGAGGCAGCCTGCCGGCGCTGCAGCTCCTCCTCGACCAGGGAGCCAAGTTCTCCTACAGAGACAAGTTGCAGAGCACTCCTCTCCATGTTGCTGTGCGGACCGGACACTGTGATTGTGCTGAGCATCTCATCCACTGTGGAGCCGACGTCAACGCCAAAGACAGAGACGGAGACACGCCCATGCACGATGCCGTGAGAATAAACAGATTCAAGATGATTAGGCTGTTGATGATGTACGGGGCCAGCCTCAACACAAAGAACTGTGACGGAAAAACTCCACTGGAGACGCTGTACGCGTGGCAGAACGGAGCCAAGAGCCTCCTGTGTAACTTCAACAGCAAGGACAAGGCCAACCAGTGACCCGACATTCCAGTAAAAGCAGGACTTCAACATAATATCCAGCCACATGATCTACTGGCTCTAACCCATTCTAGTCATGTCCATACTGCGGCTCACCAAGCACACGTCTGTTTTTAAATAGCTGTTTATCCAGCGAGGCTGCGCCAAGGGTTCACGTCACATTCAAACTGTCTCGTATGTTGACTGAGGTATCGACCCCCTCAGGAAAATAATCTAAAGTTGGCTCAGCTGGAGCGTTTGGGTGCTGGAAGACATCTTAACTAATAGAGCATCAGTCATTAACTGGTTCAGGGATTTGAACTATACAATACTGAACAATATTGGCTTTTGGCAAGGTAACATTTTCACATTTGGCGGCAGGAACTCGAAGGAGCCTTTTAATTAACACTGTGAACTCTAATCAGGATGTTGTTAATAATGTGACCATTAGCACCGATAGATTCATTGAATCGCCAAACTTTGCTGGACAATGTCTCGGCTGACAgcatgaagatgttttcttcttctttttttaattgctaCTTTAAGCTGAGTTTGAAGTCAGCGATACTGCATTGAGatgtatttattgattattgacTTACTGTCAGCAACCAATTTATTGggtttgattgatttatttcaaTACTATACACTTAATATCTGAGCTGAGTGACTGTCGAGTTATACTGTGGTTGGTTTGGTGGATTCCTTTGGTCAGGTTTGAACcaattatattaaattaaaatttatCAATTTTCATTTACTAACTAATGAAAACAACTGGCACACTGTCTTCACAGTCCCATTGGATCAACAGTCTGTGGATCGACTCCAGtgccaaaatacatttaattaaagctgcaagcagcgatgaatGGGCCCTCACCCCGGCACGTCGGGCGTACTGGCGATTTATATTTAACCCTTgggttgtcttcctgtcgacgaTGCAACTTTTTGTTCTTCTGGGTCAACATTTTAGTTGTTCgcaatttgtcacttttcccggtATTTTTGTCGgttttatgatgtttttgtagattttttttccgcgctttatttatgttttcatCTATGTTTTTCGCTGCATTTCTGAAGCTTTTTCCGgaatttttgacacttttttcaatgttcttttgtcatttttttttcaaatgctataaaattgaataaaacacccaaattcaatgaaagtagtgaactgatcagttATTTTCCTTGTGAAGAGCGTCATATGGAAgcatccacgttattttctttgacaatttggttgaaagaaacccaaatttgtgatgtagaaactttttgaaaatgggtcaaatttgactcgaggacaacaggagggttacaTTTTAAACACAGCCTCAGAGGAGCATGGGGAACAACTGGGCCGAGTTTCTTCTAATTCAGAATAACTGTTGCCCAGATACGcaacacttcctgttttgactgCCACcttcaggaagttggtcctctataacttgcgcattttttttaactatcaaaattcttttgataactttttgttgTGAGGGTCCACCGTGTATACATGCAATATTTCGTGCAGTTCGGACTGATGCCCTAAGAGGAGTTACAAAAAGTAGGTTTTGCATACATCGCGATTTAccaaattattataaaaaattaaaacagggGCTGGTACGTGGTAGAGCgcgcacccatatatagaggtttactcctcgacgcagctgccacaggtttgactccgacctgtggccctttgctaca

Function

symbol description
ankrd1 Enables several functions, including R-SMAD binding activity; histone deacetylase binding activity; and p53 binding activity. Involved in several processes, including cellular response to cytokine stimulus; cellular response to mechanical stimulus; and positive regulation of DNA damage response, signal transduction by p53 class mediator. Located in cytosol; fibrillar center; and nucleoplasm. Implicated in congenital structural myopathy; dilated cardiomyopathy; hypertrophic cardiomyopathy; nemaline myopathy; and spinal muscular atrophy.

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 1

GO: NA

KEGG:

id description
K21433 ANKRD1; ankyrin repeat domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782936.1 True 2743 mRNA 0.45 9 3813407 3827078

Neighbor

gene id symbol gene type direction distance location
ppp1r3ca ppp1r3c coding upstream 221611 3589225 ~ 3591796 (+)
fgfbp3 fgfbp3 coding upstream 251987 3548104 ~ 3561420 (+)
LOC120548444 LOC108246626 coding upstream 279179 3532714 ~ 3534228 (+)
LOC120548518 LOC103361435,LOC104937509 coding upstream 321034 3480321 ~ 3492373 (+)
LOC120548100 LOC103372105 coding upstream 431316 3347038 ~ 3382091 (+)
LOC120548162 NA coding downstream 5508 3832586 ~ 3845675 (+)
LOC120548448 NA coding downstream 180648 4007726 ~ 4064499 (+)
LOC120547632 NA coding downstream 523526 4350604 ~ 4352975 (+)
LOC120548450 NA coding downstream 551127 4378205 ~ 4382442 (+)
LOC120548201 NA coding downstream 557060 4384138 ~ 4389785 (+)
G191793 NA non-coding upstream 82866 3702592 ~ 3730541 (+)
G191790 NA non-coding upstream 170387 3640618 ~ 3643020 (+)
G191789 NA non-coding upstream 173237 3638179 ~ 3640170 (+)
G191787 NA non-coding upstream 186488 3626655 ~ 3626919 (+)
G191785 NA non-coding upstream 188705 3623350 ~ 3624702 (+)
G191821 NA non-coding downstream 24209 3851287 ~ 3851808 (+)
LOC120547548 NA non-coding downstream 54587 3881665 ~ 3882305 (+)
LOC120548325 NA non-coding downstream 87481 3914559 ~ 4000186 (+)
G191885 NA non-coding downstream 350757 4177835 ~ 4178130 (+)
G191887 NA non-coding downstream 359326 4186404 ~ 4186657 (+)
LOC120547552 NA other upstream 474322 3163824 ~ 3339085 (+)
LOC120548437 NA other upstream 702449 3093967 ~ 3110958 (+)
G191571 NA other upstream 794959 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other upstream 1035040 2775308 ~ 2778367 (+)
G191567 sptbn1 other upstream 1047345 2762050 ~ 2766062 (+)
arfgef3 arfgef3,LOC102791283 other downstream 423527 4250605 ~ 4347579 (+)
G191903 NA other downstream 460819 4287897 ~ 4288644 (+)
LOC120548449 NA other downstream 540073 4367151 ~ 4368326 (+)
LOC120548511 LOC101485366,LOC100693926 other downstream 801979 4629057 ~ 4678348 (+)
G192040 LOC104951079 other downstream 1059298 4886376 ~ 4887023 (+)

Expression


Co-expression Network