six2a (six2)


Basic Information

Item Value
gene id six2a
gene name six2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11111368 ~ 11114805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783020.1
CTCAAAGCATATCAGGTTACCTTGAGTGACAGCGTAACCATGGCAAATAATTTGACTAAGGCTATTGTCTTATCCTCACCATCCCCAGGTCAAataaccaaccaatcagagttcATATAATCGCTTGTCTTGCCAGCTtagaataatattattaaaacgAGCCAGCGAGCCCGGTCTCCGGGAGTAGGTTATGTTGAAACGGCATAGAAAAGGTGGAGGAGGACGGTTGAAGGAGTAGcaactttctctctttctcaccaACTATATGAGGGATTGTCGCCTGGGGTTTTGCATGGCTGAATGGACTTGAGTTAATACGCAGTTGGATATTACCTAACCTTGGGCTGTTTTAAGTTTTAGGCTGCTCTTTTGGGGACCTTTTGTCGCTTATGGACTTAATGCGTTTTGATTTAATGTGAGACTGAGAGGGGAGACGTGGAAGTAAGGCACAATATAATCTGTATTGATTTACGTTGTCGCCATGTCCATGCTTCCGACGTTTGGTTTTACGCAGGAACAAGTTGCGTGTGTTTGCGAAGTACTCCAACAAGGGGGGAACATCGAGCGGCTGGGGCGCTTCCTCTGGTCGCTCCCGGCGTGCGAACACCTCCACAAAAATGAGAGCGTCCTCAAAGCGAAAGCCGTGGTCGCTTTCCACCGGGGGAACTTCCGAGAGCTCTACAAGATCCTGGAGAGCCACCAGTTTTCGCCGCACAACCACCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCACTACATCGAGGCGGAGAAGCTGAGAGGCCGCCCGCTCGGCGCCGTGGGGAAGTACCGCGTCCGGAGAAAGTTCCCCCTGCCTCGCTCCATCTGGGACGGAGAAGAGACAAGCTATTGCTTCAAGGAAAAGAGCAGGAGCGTCCTCCGAGAGTGGTACACCCACAATCCTTACCCATCCCCGCGGGAGAAAAGAGAGCTGGCCGAGGCCACGGGACTCACGACCACGCAGGTCAGCAACTGGTTCAAAAACCGACGGCAGCGAGACCGCGCAGCGGAGGCGAAGGAAAGAGAAAACAACGAGAACTCCAACAGCAATAGTCACAACCCATTGACTTCTTCCATGAATGGAAATAAATCTCTATTGGGGAGCTCGGACGACGATAAAACACCCTCGGGGACACCGGATCACACGTCTCAGAGCCCGGCTCTGCTCCTCGGCTCACACACCGGTTTACAGTCCCTGCACGGCCTCGCGCCCCCGCCAGGACCCAGCGCCATCCCGGTACCCAGCGGTGCAGACTCGGTGCACCATCACCACTCATTGCACCACGACACCATACTGAACCCTATGTCTTCTAATCTAGTGGACCTTGGCTCTTAAAAAAGCGGCACAGaagaaggacagagagcagccgtcttttttttttaaagaaatttacGAGGTGGCGTGAGTCAAGCTTCAAGCACTTGCGGCAAGGTGCAAGGCAGAAAGACTGGACTGGAACACTGCGAAATCAGCCACCATAACAAATCATTTAGTCTCATACTCAACGTTTAAAGTCTTTTTAAACAAGTGGGAGAAATCTGCCAGTGGGCGAACTTATGCACAATTACACTTATAAACCGCTTGTTTCGGGGATTTTCTAGTTACAAGTGTCAAGGCAGAGCACTTAAGAACATTTGGAAATATAGCCTACTTAAAACAGGTACCATCTATTGGCATATTTTCTCTTTAATTCGCACAAGGGAAATGATATTCGAACACGATTAATAGAGGTTATATGGCTTGTTAAAACGGATCATTTTTGCAGTGCTGGTGCAGACAAAAGGTGAAGCGGATCTAGGTCgttttaggtaaaaaaaaaaaagaaaagtaataaaaagtattACCAGAATGTAATAACGTTACATGTTATATTGttgaaaa

Function

symbol description
six2 Enables sequence-specific double-stranded DNA binding activity. Involved in cell migration; cell population proliferation; and kidney development. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein SIX2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783020.1 True 1900 mRNA 0.49 2 11111368 11114805

Neighbor

gene id symbol gene type direction distance location
srbd1 srbd1,LOC102778372 coding upstream 93351 10965298 ~ 11018017 (+)
LOC120548125 ppp4r3b coding upstream 238928 10861935 ~ 10872440 (+)
LOC120548124 pnpt1 coding upstream 251817 10848185 ~ 10859551 (+)
camk2g2 LOC102311605,LOC101480272,LOC100707324,LOC102797899,LOC103476425,LOC103386999,LOC107089901,LOC103137428,LOC106959359 coding upstream 346237 10701254 ~ 10765131 (+)
si:dkey-174i8.1 LOC104941281,LOC100697478 coding upstream 420283 10681261 ~ 10691085 (+)
znhit2 NA coding downstream 316493 11431298 ~ 11433996 (+)
lrpprc lrpprc,LOC102780371 coding downstream 319795 11434600 ~ 11492318 (+)
abcg5 abcg5 coding downstream 393290 11508095 ~ 11518919 (+)
hint1 hint1,LOC102782004 coding downstream 412512 11527317 ~ 11529227 (+)
LOC120547549 tmem26 coding downstream 554568 11669373 ~ 11679111 (+)
G192945 NA non-coding upstream 92437 11018140 ~ 11018931 (+)
G192940 NA non-coding upstream 114723 10938359 ~ 10996645 (+)
G192942 NA non-coding upstream 148519 10959214 ~ 10962849 (+)
G192900 NA non-coding upstream 343314 10767031 ~ 10768054 (+)
G192821 NA non-coding upstream 755253 10354551 ~ 10356115 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding downstream 20275 11135080 ~ 11139366 (+)
G192995 NA non-coding downstream 31999 11146804 ~ 11150208 (+)
G193041 NA non-coding downstream 268288 11383093 ~ 11386325 (+)
G193047 NA non-coding downstream 279289 11394094 ~ 11419102 (+)
G193161 NA non-coding downstream 600411 11715216 ~ 11715850 (+)
LOC120548129 LOC107375852 other upstream 154746 10953053 ~ 10956622 (+)
mrpl57 mrpl57 other upstream 520075 10586778 ~ 10591293 (+)
G192834 NA other upstream 669283 10441527 ~ 10442085 (+)
LOC120547509 NA other upstream 787608 10314946 ~ 10323760 (+)
LOC120547507 NA other upstream 819079 10264097 ~ 10292289 (+)
G192994 NA other downstream 35514 11150319 ~ 11152241 (+)
prepl prepl,slc3a1 other downstream 242235 11357040 ~ 11368623 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other downstream 459593 11574398 ~ 11584172 (+)
sdccag8 sdccag8 other downstream 603088 11717893 ~ 11790539 (+)
zbtb18 zbtb18,LOC102787611 other downstream 742182 11856987 ~ 11891203 (+)

Expression


Co-expression Network