ddx43 (ddx43,LOC107693529,LOC107588708)


Basic Information

Item Value
gene id ddx43
gene name ddx43,LOC107693529,LOC107588708
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9606525 ~ 9624564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783029.1
AGCTAATTGCGGTTAGTGAACTAGCTAGCTGGCAGGTGTGGAGCcaaatttaaaatgtctgaCTGGGAGGATGAGTACAGCGAGGGCGGCGTTGCTATACAGAAGCCTGCTACAAAATCAACTCCCAATGAATGGAATTTGTCACGGTATGACAGTCAaggtcaaaatgtaaattttggTGTAAGAAATGGAACCAGGTCTGCATCATCAAGAGAGTGGAGAGCCGATCGTAGCGAGGGGTTCGAGTACACAAATCGGAGAGGCGAAGTCGGTCCGTTTCCCCGGAGCACGGATCGCGGAGGCCCTGGACGACGAACTTTTGGCGATAAAAAGTCGGACTCTTCCCAGCCTGTGACTTTCACCGTGGAAAATGGTTTAGTTGGGAGGGTAATAGGCCGCGGAGGAGCCAAAATTCGTGAACTTGAGGAGAGCACCGGTGCAAGGATCAAGataaaCAATGGGGACCATGAAGCTGAGGTGGTCCTCTTTGGGTCTTCTGCTGCCCAGCAGAAGGCCAAGGAGATGATTGAAGAACTGGTAGCAGATGGCAACTCTCGATTTCGCAATGGTCCTGGTAGAGGGGGAGACTATGGTGGAGCAGATGATGGAGGAGGCTACAGAGGGAGAGGTGGTGGAGGAGACCACAGAGGgagaggtggtggaggaggagaccACAGAGGGAGAGGTGTTGGAGGAGTAAGGGATAGCTCTGTCTGGTCTGCTGCAGAATTAGATGCTGCAGATGTTGCCCCGCCCCCTGTATCCATAGACTGGAACACCATCCGGGAGAATAAGGACAAGTATGCAGAGCTCAAGTGGAAGGACCTCCCACCCTTAAAGAAGAATTTTTACACTGAGGCAGAGAGTGTATCCATGCTCACAGCAGAGGAAGTCCGTGAATGGAGGAAGGAGAATAACAACATCTTTGTGGACGACCtgaaggaggagggggagaaacGTCTTTTTCCCAATCCTTGTCGCACTTTTCTGGAGGCCTTCGAACTATATCCAGAGATCATGGAAAATATTGAACGAGTTGGCTTTGTCAAGCCAACACCCATCCAGTCTCAGGCGTGGCCAGTGTCACTGAGCGGAGAGGACCTGATAGCCATTGCTCAGACAGGAACAGGCAAAACCCTGGCCTACCTGCTGCCAGGGTTCATTCACATGGATGGACAGCCTTTGCCTAGAGCTGAGCGGGGTGGTCCAGGCATGTTGGTGCTGACTCCCACCAGAGAGCTGGCCCTGCAGATTGAAACTGAGTGCAAGAAGTACAGCTACAAGGGCTACAAAAGTGTCTGTATATATGGTGGAGGGGATAGGAGAGCCCAGATCAACCTGGTGAGGGGGGGCGTGGACATAGTGATCGCTACACCAGGCCGACTAAATGATCTACAGATGAATGAGCTCATTAATCTTCGCTCAATCACCTACTTGGTGCTGGACGAGGCTGACCGTATGCTAGATATGGGCTTTGAACCCCAGATTATGAAGATTCTCCTGGACATTcgcccagacagacagactgtcatgACCAGTGCCACCTGGCCTACCGGTGTGAGGCGATTGGCCAAATCTTATCTAAAGAATCCCATGATGGTTTATGTGGGCACCCTAGACTTGGCGGCTGTTAACACAGTGCAGCAAACAGTGCTGATCGTCCATGAAGACGAGAAAAAGTCCTACGTGTTTGACTTCCTCAGAAACATGCTGCCCACTGATAAAGTCCTTATCTTTGTTGGCAAGAAGCTTGTGTGTGATGACCTGTCCAGTGACATGTGTCTGCAGGGCCTGGCTGTGCAAAGTCTCCATGGTGACCGTGAGCAGTATGACCGTGAAGAGGCCCTCAAAGACTTTAAAGATAGCCGAGTTCGTATCCTGGTTGCTACAGATTTAGCATCTCGAGGGTTGGATGTCATTGACATAACGCATGTCTTTAACTATGACTTCCCACGTAACATAGAGGAGTATGTCCATCGCGTGGGCCGAACTGGCCGAGCAGGACGCTTAGGTGCTGCTGTTACCCTGGTAACAAGACAAGACTGGAGGATGGCCGCTGAGCTGATTCCCATCCTGGAGCGAGCGGGACAGGAGGTCCCTGAGGAGCTGGTGCTTATGGCAGAGAGATATGAGAGGCACAAGAGGGAAAAGGAGCTGTGCAATCCAAGGGGagggggaggtggaggaggaggtggcggAGGAGGATGGGGAAGGAGAGATGGTGGAGGGAGAGGAGGCAGGGATCGAAGCCAAAACTGGGGATTCTAAATGCTTGATTGTCCAACAAGGTGAAACAAGATCTGAATCTgcatgttgtaatttcttttgaatgtatatttgattttttttttttttctttgatttatGTTTTGCTGGATTATCATCCATTATCAGTGAGGTAGTTACACCTCATTATGTTGTGCTcctgttttaaaaaatgtttaaaatgcacAATTTTGTTTGTTACAATGTTTTCTGCTGTCTGTAACTCACCAACCATAGCGGTGTTTAGTATCACGTtgaatattttgtttatgtaaTTTGTGGATTTGGGCAGAAATAAATCCATATAATAAATTCTCCATTTGAAGAGACGTGA
>XR_005637075.1
AGCTAATTGCGGTTAGTGAACTAGCTAGCTGGCAGGTGTGGAGCcaaatttaaaatgtctgaCTGGGAGGATGAGTACAGCGAGGGCGGCGTTGCTATACAGAAGCCTGCTACAAAATCAACTCCCAATGAATGGAATTTGTCACGGTATGACAGTCAaggtcaaaatgtaaattttggTGTAAGAAATGGAACCAGGTCTGCATCATCAAGAGAGTGGAGAGCCGATCGTAGCGAGGGGTTCGAGTACACAAATCGGAGAGGCGAAGTCGGTCCGTTTCCCCGGAGCACGGATCGCGGAGGCCCTGGACGACGAACTTTTGGCGATAAAAAGTCGGACTCTTCCCAGCCTGTGACTTTCACCGTGGAAAATGGTTTAGTTGGGAGGGTAATAGGCCGCGGAGGAGCCAAAATTCGTGAACTTGAGGAGAGCACCGGTGCAAGGATCAAGataaaCAATGGGGACCATGAAGCTGAGGTGGTCCTCTTTGGGTCTTCTGCTGCCCAGCAGAAGGCCAAGGAGATGATTGAAGAACTGGTAGCAGATGGCAACTCTCGATTTCGCAATGGTCCTGGTAGAGGGGGAGACTATGGTGGAGCAGATGATGGAGGAGGCTACAGAGGGAGAGGTGGTGGAGGAGACCACAGAGGgagaggtggtggaggaggagaccACAGAGGGAGAGGTGTTGGAGGAGTAAGGGATAGCTCTGTCTGGTCTGCTGCAGAATTAGATGCTGCAGATGTTGCCCCGCCCCCTGTATCCATAGACTGGAACACCATCCGGGAGAATAAGGACAAGTATGCAGAGCTCAAGTGGAAGGACCTCCCACCCTTAAAGAAGAATTTTTACACTGAGGCAGAGAGTGTATCCATGCTCACAGCAGAGGAAGTCCGTGAATGGAGGAAGGAGAATAACAACATCTTTGTGGACGACCtgaaggaggagggggagaaacGTCTTTTTCCCAATCCTTGTCGCACTTTTCTGGAGGCCTTCGAACTATATCCAGAGATCATGGAAAATATTGAACGAGTTGGCTTTGTCAAGCCAACACCCATCCAGTCTCAGGCGTGGCCAGTGTCACTGAGCGGAGAGGACCTGATAGCCATTGCTCAGACAGGAACAGGCAAAACCCTGGCCTACCTGCTGCCAGGGTTCATTCACATGGATGGACAGCCTTTGCCTAGAGCTGAGCGGGGTGGTCCAGGCATGTTGGTGCTGACTCCCACCAGAGAGCTGGCCCTGCAGATTGAAACTGAGTGCAAGAAGTACAGCTACAAGGGCTACAAAAGTGTCTGTATATATGGTGGAGGGGATAGGAGAGCCCAGATCAACCTGGTGAGGGGGGGCGTGGACATAGTGATCGCTACACCAGGCCGACTAAATGATCTACAGATGAATGAGCTCATTAATCTTCGCTCAATCACCTACTTGGTGCTGGACGAGGCTGACCGTATGCTAGATATGGGCTTTGAACCCCAGATTATGAAGATTCTCCTGGACATTcgcccagacagacagactgtcatgACCAGTGCCACCTGGCCTACCGGTGTGAGGCGATTGGCCAAATCTTATCTAAAGAATCCCATGATGGTTTATGTGGGCACCCTAGACTTGGCGGCTGTTAACACAGTGCAGCAAACAGTGCTGATCGTCCATGAAGACGAGAAAAAGTCCTACGTGTTTGACTTCCTCAGAAACATGCTGCCCACTGATAAAGTCCTTATCTTTGTTGGCAAGAAGCTTGTGTGTGATGACCTGTCCAGTGACATGTGTCTGCAGGGCCTGGCTGTGCAAAGTCTCCATGGTGACCGTGAGCAGTATGACCGTGAAGAGGCCCTCAAAGACTTTAAAGATAGCCGAGTTCGTATCCTGGTTGCTACAGATTTAGCATCTCGAGGGTTGGATGTCATTGACATAACGCATGTCTTTAACTATGACTTCCCACGTAACATAGAGGAGTATGTCCATCGCGTGGGCCGAACTGGCCGAGCAGGACGCTTAGGTGCTGCTGTTACCCTGGTAACAAGACAAGACTGGAGGATGGCCGCTGAGCTGATTCCCATCCTGGAGCGAGCGGGACAGGAGGTCCCTGAGGAGCTGGTGCTTATGGCAGAGAGATATGAGAGGCACAAGAGGGAAAAGGAGCTGTGCAATCCAAGGGGagggggaggtggaggaggaggtggcggAGGAGGATGGGGAAGGAGAGATGGTGGAGGGAGAGGAGGCAGGGATCGAAGCCAAAACTGGGGATTCTAAATGCTTGATTGTCCAAgctgaaaaGGCACCAAAAAAAGTTTACCTGGAAGATGCCAAagTGATACCCTGCATCAAGTCCAAGCACTCATCTGCAGTACGTGGACAGGAAGTGACTTTGCTCAGCTGAACATGTAAGATTTAAAA

Function

symbol description
ddx43 Predicted to enable RNA binding activity and RNA helicase activity. Orthologous to several human genes including DDX43 (DEAD-box helicase 43).

NR:

description
probable ATP-dependent RNA helicase DDX43

GO: NA

KEGG:

id description
K17043 DDX43; ATP-dependent RNA helicase DDX43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783029.1 True 2599 mRNA 0.49 17 9606525 9624120
XR_005637075.1 False 2412 transcript 0.51 18 9606525 9624564

Neighbor

gene id symbol gene type direction distance location
pno1 pno1 coding upstream 159049 9442876 ~ 9447476 (+)
LOC120547702 LOC101470025,LOC103386883 coding upstream 168615 9421344 ~ 9437910 (+)
LOC120548362 NA coding upstream 272527 9327374 ~ 9333998 (+)
LOC120548133 actr2,LOC104930021,LOC108423375,LOC105008543 coding upstream 658420 8930547 ~ 8948105 (+)
aftphb NA coding upstream 679035 8917425 ~ 8927490 (+)
LOC120548339 NA coding downstream 122744 9747308 ~ 9754782 (+)
mrps5 mrps5 coding downstream 473168 10097732 ~ 10123497 (+)
zgc:65997 LOC101480976,LOC102212345,LOC100706081,LOC104967569,LOC107089893,LOC105937212 coding downstream 558532 10183096 ~ 10187447 (+)
LOC120547607 NA coding downstream 596996 10221560 ~ 10236944 (+)
LOC120547519 vip coding downstream 903636 10528200 ~ 10534574 (+)
G192667 NA non-coding upstream 115397 9487763 ~ 9491128 (+)
G192634 NA non-coding upstream 156704 9404402 ~ 9449821 (+)
G192633 NA non-coding upstream 187201 9397548 ~ 9419324 (+)
LOC120548135 NA non-coding upstream 548107 8977204 ~ 9058418 (+)
G192530 NA non-coding upstream 701648 8857991 ~ 8904877 (+)
G192691 LOC104930997,LOC101166076,LOC103372934,LOC102208791 non-coding downstream 10201 9634765 ~ 9638011 (+)
G192692 eef1a1a,LOC103386869,LOC105912050,LOC103476462,LOC106576970 non-coding downstream 13817 9638381 ~ 9640978 (+)
G192713 map4k3 non-coding downstream 54172 9678736 ~ 9680975 (+)
G192733 NA non-coding downstream 142697 9767261 ~ 9772128 (+)
G192734 NA non-coding downstream 178731 9803295 ~ 9803651 (+)
kcnq5a LOC101074332,LOC101486129 other upstream 3643 9496791 ~ 9602882 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other upstream 411109 9114656 ~ 9195416 (+)
bean1 bean1,LOC102779979 other upstream 1487462 8066336 ~ 8119063 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 2801973 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 2817439 6775743 ~ 6789086 (+)
arhgef33 arhgef33,LOC107098984 other downstream 29340 9653904 ~ 9673252 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 568465 10193029 ~ 10219271 (+)
LOC120547507 NA other downstream 639533 10264097 ~ 10292289 (+)
LOC120547509 NA other downstream 690382 10314946 ~ 10323760 (+)
G192834 NA other downstream 816963 10441527 ~ 10442085 (+)

Expression


Co-expression Network