lrpprc (lrpprc,LOC102780371)


Basic Information

Item Value
gene id lrpprc
gene name lrpprc,LOC102780371
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11434600 ~ 11492318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783267.1
GGAGCGGATGCCCTTCCACGGTGCGACAGAAAACATGGCTGCGCTCTTGAGATCAGCCCGGTTACTCAAGTTTTCGCCTTCGGGCTTGCTTCAGATCACAGGGACCAAACGAAACGGGCCGACACTCAGTCGTCTGTACAGCGGAGCTCTCGGCGGCAGAGGGACCGGAGTTTGTTCCCGACAAATAAGCCCTACTTCGGGAAACGCGTCCAGTCGTGTGTGGCCATATGCGGTGGGGTGTGTGCGTAACTATGCTGTGGCCACAGAGCAGAAGGATGAGGCCAGCGCTGCGGTGCGGTCCAAGCAGGCGCAGCAGTTTGACTGGGCTCTGGCCAAGCTGGACAGCTCTGTGAGGAGAACCGGTCGCATCACCAAGACCCTGTTGCTCCGCATCTTCCATGATATCTGCAGGACAGgttaTCCCAGTGGTAACCAGGCCTTGTTACTGCTGCGTAGCTGTGGGTCGCTGCTGCCCGAGGTGCCCCTGGAGGAGCGCTCTGAGCTGGCACACCGTGTGTGGGAGAAGCTGCAGGAGTTGGGTGCACAGTATGACGTTAGTCACTACAACGCCTTGCTGAAGGTTTACCTGCAAAATGAGTTCAAGTTCTCCCCCACTGACTTCCTGGCCAAGATGGAATCAGCTAACGTCCAGCCCAACAGAGTTACCTACCAGAGACTGATAGCAGCCTACTGCCAAAATGGAGATATCGATGGAGCCAGCACCATTTTGGGTTTCATGAAGAGCAAAGATTTGCCCATCACTGAGGCTGTTTTCAACTCCCTGGTGACAGGCCATGCTTGTGCAGGGGACATCGAGAGTGCTAAGAACATCCTGCCTGTGATGCGGGGAGCAGGAATTGAACCGGGTCCCGACACTTATGTTGCACTGCTTAATGCCTACGCTGCAAAGGGAGACCTGGACAGTTTAAAAAAGACTATGGAGGCAGCAGAGAGTGCCGACTGCAGTCTGATGGACAGGGACGTCATGCAGGTCATCTTCACTCTGGCCAAGTCCGGACACCAGCAGCACATCCCAGAGATGGTGGAGCGCTTGAGGCACGAGAGGGGCTACGTTCCAGATGCCATGAACTTGTGTCTGAGCCTCATCACCCAGAGGCAGGAGGACACAGCTTTTCACATCCTGAAGACTTTCCCCACACTGCAGTCTGAAAGCTTCAACACGGAGTCTGCCAACCTGGGCAACTTCTTCCTCAGACACTGTGTCAACATGGACACGTCACTGGAGAAGATCGGCAGCTATTGCAAAGAGCTCCAGGAGTCTAATCTGCACACTGCGGCGCTCAGCTTCACTCTGTCCTGTGCACTAGAGGCCAAGAAGATCGGGAGGTCTTTAGAGCTGATGAAGATGTTGAAGGAGCAGGACTTTCCCATAAGGCCTCACTACTTTTGGCCCCTCCTCACTCAGCATGTGAAAGACAGCAACACAGctggtgtggtTGAGGTGGTAAAGGGCATGCAGGAGCTGGAGGTCTGCCCTGATGTTGAGACTTTATCCAACTACATCCTCCCTGTCTTCCCCAGCATGGAAGCAGCTCGACAGGCCCTCAAgGATGCAGGCATCTCTTTGGAGTCGGAGGGCTTCTTGTCTTCAGAGGTGCGTTCAGTGGCTGTTAGCAACCTGGCTGAACTCTACACCATACTGTCTGATCCCTCCTGCCCCTCGTTGGACCTCAGTATTTTCCGCGGCAGCCTCATCCTGGGCTTCAGAAAGTCTTCTGATGTGGAGAGCATGGTGAAGATTACTGAGCTTTTGTACAAAGACGAGCGCTTCGCTAAAGGAAGCTCCAAGGCTTCTGAAGCGGCATCCTACTTCTTGTACAATGTGATCGACAGCATGTCAGAGGGAGAGGTGCAGGCACAGGAAGACAAACTGCGCAAATACTTCAATCAACTACAggctcagAACATAACCATTTCAGGCAACATCTACAGAGGTATCAAGAACCTTCTGGAGTCCTACCATGTCCCAGAGCTCACCAAGgACGTGGTTGCTTTGGTGGACCCCAAAGACAGAGTGTCCAATGGCTCTGTGTCAGCTGTTCCCCGTGTCACTGGAATTGAGGGTAAGGTGTTGGCACTTGAGAAGAAACTTGCCGAGCTGAAGGCAGAGAACAAACCATTAGGCAATGTTCTCAAACAAGCCATCCAGACTCTTTGCGCCGAGGAGAACCTGCAGCGCGCACTTGAGCTGAAGCAGCAGCACGAGGAGGAGATGACAGTCGGCGGCTATGCCACCCTCATCAACCTGTGCTGTCGCCACGACAATGTGGAGGAGGCGCTCAACCTGAAGAGGGAAATGACTCGTAAGGACTCATCAGTCGTACTGGATGCCAGTAAATACATCGCATTGGTCAAGGCCCTCTCCAAGAATGACAAAGTGGAGGAGGCAGTGGACATCCTGAAGgagatgaaagagaaagaggtggTGATGAATGACACACACGTCACCATGCTCTTTCACACGCTCAACGCCGTGGTGGCCAAGGGCGGCGCCCCCACCATCAGACGCCTGCAGGACACCATCTTCACCCTTGGACTGGCCAAGCCCACCGCCAATCTCTGCTCACCCCTCATTACTGCCTACCTGGACAGTAAAGACCTGGCTGGAGCTCTAGAAGCAGCACTGGAGTGTCAGAAGCGCTACAACCACCTGCCTCGCATCCACGACATCGTTGTTGCTCTGGTGGAGAAAGGAGACACCGAACTGCTGCAAAAAGCCATGGACTTTGTTAGTCAGGAGCGAGGCGAGATGACCATGCTGTATGATCTGTTCTTCGCATTCTTGCAGACAGGCCGCTACCGTGAGGCTCGTAAGATCATTGAGaCCCCAGGGCTGAGGGCACGGCCTGGACGCCTGCACTGGTATGCAGAGAAATGCATTTCATCCAAtcagATGGAGGCCTTGGAGCAGATGGTGGACATGACAACCAAGCTCTTTGAGTGCGACAGGGATGAGATGTACAGTTACATCCTCCGtctttgcaAGGAGACAAACGACTGGCAAAAGGCAGAAGCAGTATGGACGAAGATGCAGGAGGAGAACGTCATTCCCAGGGAGAGGACCCTGCGTATGCTGGCAGACGTCCTGAAGAATAATGGCCAGGAGGTGCCCTTTGAGGTGCCTGAGACCTGGTACCAACAAGCTGCCACCACACAGCAGGTCAAGTCGGCAACAACCCTCCCCACAGCCGAAAGTGGTGCTGAATACCAGGCCCGTCTGTTGGCCTTCTGTAAAAGGGGCAAAGCTAAAGAAGCCTATGGGATGCTGAAGGAAGTTGATAAAAAGGGTGTGGTATTAGGTCCCGCCCCTTACGATCACCTGATCCGGGCCCTGTTGGCCGAGGGATCCATTGAGGATGCCATGGCAGTTAAGGACATTGCTGCGTCTCATGTGCCAGGCTTTCAGCTGAGTGATATCGCCACCAATCTGCtcatcatcacacacagcaAGAAAGGCCAGGCTAAAGATGCTCTCGAGAAACTGAAGTCTATGCTGCAGGTGGACCACGTGCCTTCACAGCTCGCCATCACCAGACTGGTTCAGGCCCTGGGTAGCCAAGGCGACGTGGCGGGCATCCAGGAAGTGGAGTCACTGATGAAGGGCCTCGGCACGACCCTCAACCTGTCCAGCATGGTGTTTGTCAACAACACGGCCCTCGCACACATCAAGAATGGTGACATGGAGTCCGCAGTGGAGGTGTTGGAGGCAGTCTTCACTAGTCCAAACAGCACGACCCCCAGTATGTCCTTCGTCTTCAGAAAGATCTTGGAAGATGACAATGACAAAGCCTTAGACAAGTTGAGTGCTATGGCAGAGCGGCTAGCCAACCACTTTGCCTGCTACAGACCAGCTTCAGACCTCTTCCTCCAGCTGCTGGATATGGACAAAGTTGAGGATGCCAAGTTCATGCTGGCtCGCTGTAACGCCTTGGCTGAACAGAAGGAGGTGCTGGTGTCCTACTTGTCTCAGAAGGCTCAGCGTCCTGGACAGGTGGGCAAGATCAAGGCCCTGCTGAGCCTGATTCCAGACTTCACTGAGAAGGAGGTGTTGTACCCATACTTGATGAAATGTCATGTCCTGGATAAAGACTTATTGTCAGCCAAGGCTCTGCAAGAGCAGATGCAGAAGGAGGGGATAGTCATAGacgagctgtcactcaaacggCTGGCTGTGCTTTACCGCAATGCAGGAGAGACTGTGCCCTTCGTGGAGCCCCctGAGTCCTTTAAGTTTTATGCAGACAAGCTGAAAGAGAGAGCGGCAAAAGCCCAGACGACAGCTGAGGCATAAAGAATCATCCTCCTCACCTCCATCCAAATCCCACGGTTTTCCtcgtttgtcttttttttttttatatataaattgtCTGAGCTGAAATGTTGAgtattgtgttataactgttggATGATAGACTCTGTCCACTGTGCTATTGAgaatattgatgatgatgatgatgatgatgatgatgttgggaATGTACAGAAGTATTTATGCTAATAAATGTCACATTCTGAG

Function

symbol description
lrpprc Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in French Canadian Leigh disease and Leigh disease. Orthologous to human LRPPRC (leucine rich pentatricopeptide repeat containing).

NR:

description
leucine-rich PPR motif-containing protein, mitochondrial

GO: NA

KEGG:

id description
K17964 LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783267.1 True 4537 mRNA 0.53 38 11434600 11492318

Neighbor

gene id symbol gene type direction distance location
znhit2 NA coding upstream 604 11431298 ~ 11433996 (+)
six2a six2 coding upstream 319795 11111368 ~ 11114805 (+)
srbd1 srbd1,LOC102778372 coding upstream 416583 10965298 ~ 11018017 (+)
LOC120548125 ppp4r3b coding upstream 562160 10861935 ~ 10872440 (+)
LOC120548124 pnpt1 coding upstream 575049 10848185 ~ 10859551 (+)
abcg5 abcg5 coding downstream 15777 11508095 ~ 11518919 (+)
hint1 hint1,LOC102782004 coding downstream 34999 11527317 ~ 11529227 (+)
LOC120547549 tmem26 coding downstream 177055 11669373 ~ 11679111 (+)
LOC120548093 perp coding downstream 189498 11681816 ~ 11693240 (+)
tnfaip3 tnfaip3 coding downstream 205288 11697606 ~ 11710406 (+)
G193047 NA non-coding upstream 15498 11394094 ~ 11419102 (+)
G193041 NA non-coding upstream 48275 11383093 ~ 11386325 (+)
G192995 NA non-coding upstream 284392 11146804 ~ 11150208 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding upstream 295234 11135080 ~ 11139366 (+)
G192945 NA non-coding upstream 415669 11018140 ~ 11018931 (+)
G193161 NA non-coding downstream 222898 11715216 ~ 11715850 (+)
G193172 LOC107099926,LOC104931217,LOC103370571 non-coding downstream 294095 11786413 ~ 11791957 (+)
G193213 NA non-coding downstream 494956 11987274 ~ 11991708 (+)
LOC120548033 NA non-coding downstream 515317 12007635 ~ 12017653 (+)
G193295 NA non-coding downstream 685267 12177585 ~ 12178477 (+)
prepl prepl,slc3a1 other upstream 65977 11357040 ~ 11368623 (+)
G192994 NA other upstream 282359 11150319 ~ 11152241 (+)
LOC120548129 LOC107375852 other upstream 477978 10953053 ~ 10956622 (+)
mrpl57 mrpl57 other upstream 843307 10586778 ~ 10591293 (+)
G192834 NA other upstream 992515 10441527 ~ 10442085 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other downstream 82080 11574398 ~ 11584172 (+)
sdccag8 sdccag8 other downstream 225575 11717893 ~ 11790539 (+)
zbtb18 zbtb18,LOC102787611 other downstream 364669 11856987 ~ 11891203 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other downstream 754633 12246951 ~ 12278375 (+)
sf3b5 sf3b5 other downstream 794695 12287013 ~ 12290530 (+)

Expression


Co-expression Network