otx1 (otx1,LOC101469289,LOC105933319,LOC108245829,LOC103361189,LOC103152463,LOC106955545)


Basic Information

Item Value
gene id otx1
gene name otx1,LOC101469289,LOC105933319,LOC108245829,LOC103361189,LOC103152463,LOC106955545
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8645881 ~ 8653172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783409.1
GGAGAGAAGGTGATCAATCTCCATCCGTCTCCATTAGAAATCACCTTAACACTCTGACAGACAACGACAAGCCCCCTGAAAGCAAATGAGTTTGATTTATTTGGCTGCAAAAACACCCGGAACCGCACCGAGGACGCGGTGACGCCCGCGTGCTGATAACTGCGTTGTTTTCTCCGTGATGTCGCTCGGTTTGCacactgttgtttgtttttgagcAAGTCTGCCGCTGCTTGAGGTTTTATGCCCTGCAGACTTCCTACTGCTGGATACTTTTACTGCTGCTCGCCTCCTGCGGCCCGAGAGCTCGGGAGAAGGGAAGAGGAATAAAACAAGtgactTGGATCGGCCCCCTGTCCCGTCAAGCTGCAGCATCGGGGGAAACCGAACCACTGGCCTGAGCTGGGTGGAGCAGTGACCGCCTGTAGCATGATGTCCTACCTCAAACAGCCCCCCTACGGCGTCAACGGCCTGGGGCTCAGCGGCGCTGCCATGGACCTGCTGCACCCCTCAGTGGGCTACCCATCGACTCCCAGGAAGCAGCGACGCGAGCGGACAACCTTCACCCGCTCTCAGCTCGACGTCCTGGAGTCTCTGTTCGCCAAAACCCGGTACCCGGATATTTTCATGCGGGAGGAGGTCGCACTGAAAATCAACCTGCCGGAGTCCAGAGTCCAGGTGTGGTTCAAGAACCGGAGGGCCaagtgtcgccagcagcagcagagcggcaGCAGTGCTAAAGCCAGGCCGCCCAAGAAGAAGTCTTCCCCGGCCCGGGAGAGCACCGGCTCTGAGAGCAGCGGCCAGTTCACGCCTCCTGCCGTCTCCAGCACCGGCTCGTCCTCgtcttcatcctcctccaccAATCACACGGGCCCGGCTGCACTCAGCAGCACCTCTACCTCCATCAGCACCGTCTCCTCCATCTGGAGCCCCGCTATCTCCCCTGGAAACGCTCCTGCTCCTGCAGTGGCCCCGCTCCCCGAGCCCGGACCACCTTCTAACGCCTCCTGTATGCAGCGTTCAATGTCAGGCTCCGCTGCCGCCGCAACCTCCTACCCCATGTCCTACAACCAGACGCCGGGCTACGGCCAGGGCTACCCCACCCCATCCAGCTCTTACTTCAGCGGCGTGGACTGCGGCTCCTACCTGGCCCCCATGCActcccaccaccacccccaccaGCTCAGCCCCATGACGGCCTCCTCCATGTCGGGCCACCCGCACCACCACATCAGCCAGTCGTCAggccaccaccaccatcaccaccaccaggcCTACGGCGGCTCCGGCCTGGCCTTCAACTCCTCCGACTGCCTGGATTACAAAGAGCAGACTGCAGCCTCCTCGTGGAAGCTCAACTTTAACACCACAGACTGCTTGGACTACAAAGACCAGGCCTCCTGGAGGTTCCAAGTCTTGTGATcaggctcccccccccccccctccttcttcCCTCCCTGCTCGTCGgctccctcttcttcttttattttccaGATTAGCATATTGCTTGTTTTTAAAGGCAAAAAGAGTTTATGAACCATAAGATTACAAGATAGCAGCAGGAATGCTCAGCGATCGGACTTTGTGTTTCCTCCCTCTCACCCTCCcatgtctttttaaaaaaagaaaagaagaaaaaaaagaagagaaacagTCCCTCAAGTCCTGTGACGAGAAAACATCAGGAGCAGTTTCCTGTCAATGACGAATGGGTTTTTAAGACGTTAATTCTTGGATGACCTTAAGAAAACCAAACTGTTTTTCAAAACTACAAAAGTCATTTCAACCAAACTCCTTTGACCACCAGCTCTCTGGATGGGAGGAATATTTTCCCCTCTGGTGCACCGACAGGAACTGCCTGCAGTGCCCTTTTTACCTCCAAACCCAATCAAATCCTGTATAGTTTTTATTTCTGAAATTTGTTATTTTAGGATGACAGAGATTTTTAGTCAGCTGCGTCGAGAAGctgaaatatgtaaatatgtatttgGGTCAGTTACAGTGACCAtgtttagttgttgttgtttttttttttccgaatTTGAAATTGTTTATTACCActttgggagaaaaaaagaaaaaaaaaacctgtatgTAAATCTTTCCAAATATTCCAAAGAGAACAAATTGGCCATAAAGTTCAGCTTTTATATACTTGTTTTACTCAGAAAAATGTTTTGGCAATTTGAAATGTGTTGGGGTGGGAAAATCTCTAAATCTAAAATACAGATGCAGAACTATTCTGGGCCTTTGTCCAGGTTACAGTTTGTTTTCCGGATGTTATTATTCTAACCGCTATACATTTTCAAACCAGACCTCCTCTCTTGGGCATTGTCGTGATATTGGACATGTTTGAACCACAGCACTTGGCTTGATATTGGAGTCAGAACATTTTTAGTTTTGGAGAGGAAATGTTGATTTATTGCTCCAAAATGACAGTAAGATGTTGAATGTATCTTTAAGGCAAAACCACCCTTACATACATGTTCATCCAATAAAGATCCGTTAAGtcata

Function

symbol description
otx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear morphogenesis; lateral semicircular canal development; and retinal pigment epithelium development. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; immature eye; nervous system; neural keel; and presumptive neural plate. Orthologous to human OTX1 (orthodenticle homeobox 1).

NR:

description
PREDICTED: homeobox protein OTX1

GO: NA

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783409.1 True 2515 mRNA 0.51 4 8645881 8653172

Neighbor

gene id symbol gene type direction distance location
ehbp1 ehbp1 coding upstream 4094 8481426 ~ 8641787 (+)
b3gnt2b b3gnt2,LOC104931834,LOC103361191,LOC101061479,LOC108242584 coding upstream 195490 8420579 ~ 8450391 (+)
LOC120548244 LOC101474016,LOC102312708,LOC102214986 coding upstream 316952 8255414 ~ 8328929 (+)
LOC120548392 LOC104932692,LOC100711168,LOC102780655,LOC102196724,LOC101475056 coding upstream 508075 8130582 ~ 8137806 (+)
cdh5 LOC104953929 coding upstream 587997 8020660 ~ 8057884 (+)
mdh1ab LOC103372869,LOC100711978,LOC106913728,LOC102307187 coding downstream 89835 8743007 ~ 8748910 (+)
ugp2b LOC103372870,LOC102201608,LOC102306689 coding downstream 97566 8750738 ~ 8795592 (+)
LOC120547907 lgalsl,LOC104930018,LOC102203068 coding downstream 240174 8893346 ~ 8915696 (+)
LOC120547906 NA coding downstream 256493 8909665 ~ 8912332 (+)
aftphb NA coding downstream 264253 8917425 ~ 8927490 (+)
G192464 NA non-coding upstream 268182 8369378 ~ 8377699 (+)
LOC120548141 NA non-coding upstream 516518 8126718 ~ 8129363 (+)
G192413 NA non-coding upstream 519888 8124918 ~ 8125993 (+)
G192412 NA non-coding upstream 570922 8073781 ~ 8074959 (+)
G192381 NA non-coding upstream 693756 7907763 ~ 7952125 (+)
G192530 NA non-coding downstream 204819 8857991 ~ 8904877 (+)
LOC120548135 NA non-coding downstream 324032 8977204 ~ 9058418 (+)
G192633 NA non-coding downstream 744376 9397548 ~ 9419324 (+)
G192634 NA non-coding downstream 751230 9404402 ~ 9449821 (+)
G192667 NA non-coding downstream 834591 9487763 ~ 9491128 (+)
bean1 bean1,LOC102779979 other upstream 526818 8066336 ~ 8119063 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 1841329 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 1856795 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 2140030 6485581 ~ 6505851 (+)
itsn1 itsn1 other upstream 2284890 6324515 ~ 6360991 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 461484 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 843619 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 953353 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 1000732 9653904 ~ 9673252 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 1539857 10193029 ~ 10219271 (+)

Expression


Co-expression Network