desi2 (desi2,LOC101155051,LOC107089908)


Basic Information

Item Value
gene id desi2
gene name desi2,LOC101155051,LOC107089908
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10558561 ~ 10579945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783497.1
TACCGCTCTGCTCGCCTCGCTCGCCCACTCTTGTCGTCCAATTTTTCTTCCAGCAGTCTCATCCTGTCTGCCAGCACCAGCGcaaccgttagctagctaataggGAGTAACGTTTCATTCTCACAGAAGAATTCTGTTTTGATACCTCAGCATTGTGTCATTTTGCTGAATAATTCGCTTGGGAAAATGAATTTGCGATTTTTCCGTGCCAACACGCCTCCTAGAAGACAACCCCCCCTCCGTAAAGTCCACTTTTTCACTTCGACCTCGGTAACGTTAGCTGAACGGGTAACGTTATAGCAAGGCAGTTCGTTTTGACAAGACGAGTGGCTCATCTGTCCGCCACTGCTGCTCCGTAACGGGGGGGGGGATTTGGACAAAGCCAGTCAGATGTTGGACGGTAAAAACATCCTCGGAAATAAAACGTTTCTACGCCGTATTGTGAAATTGAATTATCAAGCTGATCATCTGTCGTGAAAGTGCCAGGGAGGAGTGAGGTATATCTTTGGAGGTCCGAGAGTTTGGAGCTCGCTCCGAAGGAAGGGGTAACGTAAGGGGTGTGCAGAGGAGGAAGACCCGCAGAGAAGAAGGGACGTAGGGGGACAAAAGCCTGATGCCAGTGATGGCAAACGAGCCGATCATCCTGAACGTTTATGATATGtACTGGATCAATGAGTTTACCAGCACTCTGGGCATCGGAGTCTTTCACTCAGGGATTGAGATCTATGGAAGAGagtttGCCTATGGCGGACACCCGTACCCATTCTCAGGGATCTTTGAGATTACACCAGGTGATGCAACCGAACTTGGCGAGACCTTTAAGTTCAAAGAAGCCATAGTCTTGGGCAGCACAGACTTCACAGAGGAGGATGTGGAACGGATCGTGGAGGAGATGGGGAAGGAGTACAAGGGCAACGCCTACCACCTCATGCACAAGAACTGCAATCACTTCTCTTCAGCACtgtcagagaTCCTGTGTGGCAGGGAGATCCCTCGCTGGGTCAACCGCCTGGCCTACTTCAGCTCCTGCGTGCCATTCCTCCAGAGCTGCCTGCCCAAAGAGTGGCTGACCCCGGCTGCCTTACAGTCCAGCGTCAGCCAGGAGCTCCACGGAGGAGGGGAGCTGGAGGAGGCCGAGGACGCCGCTGCCACAGCCTCCCTGGCATCCATGTCGCCCTGCTCAccctcatcctcctccagcCCTTCCTCCTTGCCTCGTCATTCCCGACCCCAGCCCCGCCGGTAGAAGCTGCAAGGTCTGCTGGGAGAATTGGGCTGGACTCGTGGTTATAGAGACTGTCAGGTAACAGAATACCTGCAGCAGCTGATGAGTCCAGCTACAGCCAAAAGTCCTGTCAGACTGTCTtcgagcaaggcactgaactgCTACCTGCTCTACATGTCAGCCAAATCTCTACAGTGATCCAGAGCAGTATGAAGGAACTCTTGCTGCTGACAAAGGCAGGATCATCTCTGTGAACATGGCTAATGGATTCCAACATCCCATCCAAACTATTTCCCTCAAGTGTCTTTCATTATTTTACCAGCCAACAGAATAAAAGTAACGCCGGTTGTTTACCCATCAAAGTgtttcaaagtttaccagccACATCAAGATTTTAACCAGCAGCTAGTTGGTGGATGGTGCTAATCCCCGCCTTGTTGTAGTGGAAACCAGTGAGAGGAGATGATGAAAAGCAGCGTTGGTTTGGCTCAGTTCATAAGGACTGACCTTGAACGTTGTGATTTGAGTAACCCTAGATGTTCAGACGTTTCCAAAACTATTTGACCATCCAACAAGCACTTGTGATTGAGTATAGATGATTGAAAGGATTGAAAGCATAAGAAAGaaaattatgattattattattaacttttcactgtttttttcttcttctttttttcttgtgaaatACTGGATAGTTTTCAGTCTAGCAGGTTTTTACAAAAACACCGTTAAGGTGGCGCTGCTTACCACAGCACCACCGGGAGTTCCAGAGTGTTAAAAACTCCACCAAACTAACGGGGAACACACTGAACAAGACCCTTGTTTTTCTGCTGTAATGTGAATACGCCTTAAGGGGTCTCTTCATATTGAACATCCTTACAATCTGTGCTTTTTTTTGGGAGAAGGTAGAGAACAATAAAGCACAACTGCATTGGTGTCAACACTCAGCCATGGTAGTTGCAATTTGGCCCACAACGAGACACTGAATCCTGAACATCTGCAATCTGACACCATCTGAAGAGAAACCGACTGGAACATTTCgtcattttagttttaaattACCACCAGCCAAGCGCTGGTATAATTTGATCTGTGGCTGGTAAATGTTTACACTGCAGCCAACAGTCGTTAAGATGTCCCTGAATatttggctggtaaaatttTGAATGCAGCAGCTGGAGTTCGGGAGCTATACACTTTGCCTCAACATGCTGTGTGCGCATCAGGGCCTCagccttttgtttttatttttctctcacaGCAGGCTGGATAGACTTAGACTAAGATTAAAAACTACCATCAGCCTCACACTCCTCAAACACCATACACATCCAGAACCAGCGACTAAATGGGTGAACATTTCTAACACACCTTGGATGGGTTCAGTTCCAGGTAATTTTTGCTTCCCTGTCTTTGTTCCTTTTTTATGTCAAGTCTGTATCAGCAGTTGTGGGGTATCTGTAGCAGCTCTTCCTACCTCCCATCATGGGATAATCCACGCATGATTTGAGAAACTTAAACACAATGAAGCAGATTTTTAAATGCATCATTCCGTAATgtaataattttgaaaaagcaAGTTATTTCCTAACCAATAATGTAATATTGTTAAAGAAATTCTAAATAATTTAGAAATTAGGTTGCAGGGCAGGCAGCAACCTATAGATTAGAAAATACTTTTTGTTATCCGAAGGttctttaaatttaaattcCTGAGTAAAAGAGAGTGAATTATTTCTTAGTAGCAACTGCCTTGGTGCCTTTGAGTAAGGTACTTAACCCACAAGTGTTCCAGTGGCCAACAGTAgaagactgtggttgtactgggctgCTCCCAgttgtcagtgtgtttctttgtaAGCATTAAGCAAAAATGTTTTATCTTCGCCAGAGTAAATCAAGGTTCAAGTTTACATTAAGGACATGATGTCAGCCCATAGCGATTTGTCATCTCCATAAATGTCTGAAGACGACAGGCAGTTGGAGCCAAGGAAGGGAATTTGAGGAAGAGTGTGTCTTAAATGAGAACTGACCCATTACCCCAACCCTCTTTAACTGACCTGCCATCAGCCTGCACTCCAGACAGTCATTTTCCTCACATCTGTGTTCAGTTATGGATGATGCACATTGGTGTTATTTGGAGCATCATCACAGCAACACATTTTAGGTTTTATTTCAAGCGTTTATACTTACATTACAGTCCTTAATCATCTATAGCAGTATAATTTTACACTTTACGAGAAGATGCTGCTTTTCCCATGTGATGAGCACCTCATTTAAAAACTCTTTCTATATGctgtcaacaacaacaacaacacatatgCTGCATAATGTGTATCGTCCAAAACAAGAGCAATGGATGTATTGAAAACACATTTCTAAGTAGAATTTACCTGTTTTGCTGAAAGTCTGAAGACTGAACTACAAGCAGGAAAACTGTCACtttctttgcttttattttttgtttttttttaaatcctgtaTTTCTATGATATATGGACTCTGGCCTTTatgtctgttttgtttgtttgataaacTCAGGACTCTAAAAGGCTTTGTAATATAatcctttttaacttttttatcccACATTTTATGTTTGCGTTGTTGCTTTTTCTAATGCAGTAGTCACTCCATAGAGCTTTTCAAGAACGCACTGTGGAAGTGCAGTTTTATACTCCTCTCtttgataaaaagaaaaaagagcttTTGTTTACAACCTGGATGTTTGGATGTAAGCCTGTGCTGCTCTctgttttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacagttGTATTATAAATGGTTAGTATCAACAATCTGCCATCTGGGCCAAATTTCCctacatcaaacacacacagtctaacAAATGTAGCAAATTccagtgtgcgtgtgttttaAATATTGCCACATCTTCAAGATATTGTATTTCTGTTAACCAAGTAAACTTTTTGTCCTTAAGCTAAATTTTCAGTAAAATTATTTTGGTGCAGTGGCAGATACTTTTGCAGATTAAAACTACTGGTTAAAATGTTACTTTCAGGACTTTGTTTTCTAACAAATAAACAGTACAGAAGCAGTGTTAAAGCAAAGACTCACGAAACCAGCGTATTTGTGATTTGGATTAAAAGGATTCAACTGAATATCCTATTAATATTAAATGTTACTTCATACGTTTAGGAAATCTGAATAAGAAAaaagtaaactttatttttaatgcgaacacacacacacacacacacacacacacacagagctcatgTCAGTGCCCTCTGCTGGCTGTTATTTGTACTGTTACTTGTCTgtggttttttttacacagacaGCGGGGTTTCCCTTAACCTTCATAGCTTGTTGTTACAAGATCATTTCTTTCTATTGACAAATTAACAATATGTCATCAAACACTCATTTCTACCAGCTTCCAAATGCTGGGGGAGAACATAGTTACTTTATGTTCATATCTCAACATTGAAAGTAccgcaaaaaaaacattactgagGCCAAAGATAGCTTTAACTTCACCGATCTTTTTTAGTTAACAGCCATTGGATTGTCATCACGCATGTCATTTTGGAATGAAACCCTCATTATTTGATTAAATGTATCATTATAGTAAATGTAGTAAATGTCCTTTCAAATAATTATTTGTGGGACATTACTTTTGTAAGCTATGAATGTAGATTGGGAAACCTCAGTTATTCATACCCCATAAAAACTGACTCCAGCTGTTTTACAGTGAACTTTCACAAAGCCTTCAGAAGAGTGGACCCGATTTGTACCCTGTTGtaaagttattaaagaaagctaTACAATCTGT

Function

symbol description
desi2 Predicted to enable deubiquitinase activity. Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in cytoplasm. Is expressed in several structures, including margin; nervous system; neural plate; neural tube; and trunk. Orthologous to human DESI2 (desumoylating isopeptidase 2).

NR:

description
PREDICTED: desumoylating isopeptidase 2 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K22763 DESI2, PPPDE1; deubiquitinase DESI2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783497.1 True 5165 mRNA 0.42 5 10558561 10579945

Neighbor

gene id symbol gene type direction distance location
mtrf1l mtrf1l,LOC106904956,LOC103137471 coding upstream 870 10551492 ~ 10557691 (+)
LOC120547519 vip coding upstream 23987 10528200 ~ 10534574 (+)
LOC120547607 NA coding upstream 321617 10221560 ~ 10236944 (+)
zgc:65997 LOC101480976,LOC102212345,LOC100706081,LOC104967569,LOC107089893,LOC105937212 coding upstream 371114 10183096 ~ 10187447 (+)
mrps5 mrps5 coding upstream 435064 10097732 ~ 10123497 (+)
kcnh1a kcnh1 coding downstream 12840 10592785 ~ 10632920 (+)
si:dkey-174i8.1 LOC104941281,LOC100697478 coding downstream 101316 10681261 ~ 10691085 (+)
camk2g2 LOC102311605,LOC101480272,LOC100707324,LOC102797899,LOC103476425,LOC103386999,LOC107089901,LOC103137428,LOC106959359 coding downstream 121309 10701254 ~ 10765131 (+)
LOC120548124 pnpt1 coding downstream 268240 10848185 ~ 10859551 (+)
LOC120548125 ppp4r3b coding downstream 281990 10861935 ~ 10872440 (+)
G192821 NA non-coding upstream 202446 10354551 ~ 10356115 (+)
G192771 NA non-coding upstream 319902 10236971 ~ 10238659 (+)
G192773 NA non-coding upstream 328663 10229462 ~ 10229898 (+)
G192772 NA non-coding upstream 329898 10228120 ~ 10228663 (+)
G192755 NA non-coding upstream 425329 10132536 ~ 10133232 (+)
G192900 NA non-coding downstream 187086 10767031 ~ 10768054 (+)
G192940 NA non-coding downstream 358414 10938359 ~ 10996645 (+)
G192942 NA non-coding downstream 379269 10959214 ~ 10962849 (+)
G192945 NA non-coding downstream 438195 11018140 ~ 11018931 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding downstream 555135 11135080 ~ 11139366 (+)
G192834 NA other upstream 116476 10441527 ~ 10442085 (+)
LOC120547509 NA other upstream 234801 10314946 ~ 10323760 (+)
LOC120547507 NA other upstream 266272 10264097 ~ 10292289 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other upstream 339290 10193029 ~ 10219271 (+)
arhgef33 arhgef33,LOC107098984 other upstream 885309 9653904 ~ 9673252 (+)
mrpl57 mrpl57 other downstream 6833 10586778 ~ 10591293 (+)
LOC120548129 LOC107375852 other downstream 373108 10953053 ~ 10956622 (+)
G192994 NA other downstream 570374 11150319 ~ 11152241 (+)
prepl prepl,slc3a1 other downstream 777095 11357040 ~ 11368623 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other downstream 994453 11574398 ~ 11584172 (+)

Expression


Co-expression Network