edrf1 (edrf1)


Basic Information

Item Value
gene id edrf1
gene name edrf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 14211177 ~ 14223939 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783611.1
ATGAACGTGTGCTCTGACAACAACAGAGTGACTGGCTGCTGTTGGAAGGAGAATAAGCTTCAGGCTTATTGACCTAGCTAGTTAAGTAAGGGCTAAACATTACTAAGGTTAACAAAGTAACAGCAGCCTCTCGTGTGAGTTTCATTTGGCTTTAATTTAACAACCTTGTTGTGTAACTACGCTTATTTGTTACAACTTATTGAGTCAGCGTTACTCTTTCGCGGAGCTAGCCTGTCAAGCTAGCAAACTAGAAACAACTTTATTGAAATAATTGACGTATCTCGCTCGTTATCTAGCCAATGCATAGATGTTTTGTCCAGGCCATGGATAGGTTGTCTCAttgttaaaacaaaaaagttgcCAGTGTTGGCTGGGTTGATCTGTCGTGTGTCCAGTATGAGCGCATCAGCTGGGGACAGAGAGCCTGGGATCCCCCTGGATAATGCAAAGGAAGAAGTCAGTGGCCCTACCTGCACAGGAGAGAGCAGCAAACATGACTCTGCAGTATGCGCAGGCAACAGTGAAATAAAGAGCCGTGCCGTTGTCAAGTACTCTGCCGCCCCGCCTCCTACCAGCTATGCCCTGCTGCAGGAGCAGACAGACCTGAAGCTGCCTCCTGCCAACTGGCTCAGAGAAAACCCCCAGCTGGGCAGTGCTGGCACCACTGTATTAGGATCCAGCAGCAAGAGCAAGCCTTTTTCTAGTTTTGGGATGGCTTATGAATTCATTGATTGCATCGGGGATGATGTCGACGTGGTATCAGACTCTGAGAACATCAAGAAGCTTTTGAAAATTCCCTACAGCAAGTCCCACGTCAGTATGGCCGTTCACCGCGTTGGGAGAACGTTGCTTTTGGATGAGCTGGACATTCAGGAGCTCTTCATGCGATCCTCTCAGacaGGAGATTGGACCTGGCTAAAAGAGTTTTATCAGCGGCTAATAGATCAGAAGTGgcagaggaaaaagaagagTAAAGAGCACTGGTATCAGAAAGCAATCTTGTCCAAGTTTCTCTACTACAGTATAAATGGTGATGGGGCTGCAGAGCCTGTACCAAACAACCCAAatgaaagggaggaggaggaggaggagaatgaaGGAGAGGAGTTCAGTTCTTCATGGCCCACCGCTTTCACCAGCACAGCGTCTGATACAGAAGAATCAGATGCTCCCAAGCAGGAAAGTGTTTCTATGGACAGCAAGTTTGCTCTGGGCCAGGTGACGTCGGTACACAAAGAGCAAAACCTCCCTATGCTCTTCAACGAAGGGGAGAACAGTCAGGGTTTAAGAAACGACTTTGTGCGGAACATTATGTGGACATTTGAGGATATCCACATGTTGGTTGGGTCCAACATGCCTATTTTCGGAGGTGGTCGCTATCCTGCCGTCAGTCTGAGACTCAGGGACAACAATAAACCAATCAACATTCTGACAGGTATTGACTACTGGCTCGACAATCTGATGTGTAATGTCCCAGAGCTTGTCATGTGCTTTCACGTCAATGGCATCGTTCAGAAATATGAGATGATAAAGACAGAGGAAATCCCTCATTTGGAGAACTCGACTTTCTCCACGAGGGTGGTGAAAGACATCGCCCAAAATATCCTCTCCTTCCTCAAGTCCAACTGCACCAAAGAGGGTCACACCTACTGGCTTTTCAAAGCGAGTGGGAGTGACATTGTGAAGCTTTATGATCTTACTACTCTGTGTGAGGAGGCGGAAGAAGAGAAATGTCAGAATCCCTTCACTCTTCCTGTGGCTGTGTTACTATACAGAGTTGCCAGCAACTTGATGCTGAAGGCAAGGCAAAACCGAAAGCACTATGGCACAATCAGAACTCTGCTTTTAAACTGCGTCAGACTTCTGGATCAGGAAAGGCACCCCCAGATCATCGCCTCCGCCCACTACATGCTGTCAGAGCTGTTCCAGCTCGACGAGCCCCCAGGAGAAGATGGAGGGGAGTCCCCTCGGGGCGGCGGCTCAGAGGACAGCTACAGCGACgaggacagggaggaggaggagctgacGGAGGACAGTGACGAGAACGGCTCCTACAGCTCTTGCTGCAGCCCACATGATGATAGTAAAGCTGTGGCTGTGATCCGCTCTGTTTGGGAGCTGTCGGTCCCCGAGAAATACAAATCCACTCACCAGATCAGACCGAGCAGTGCGTTCCCTGTTTCTCAAGACAAGGAGGAGAGATGCAGACACGTCCTGAGCTACGTGCTAAAGGGGCTGAAGGCAGTGGATGGCACCATCAAGAGGGAGAGTGATCTCCCAGCTGCAGACCCTAATACACCCATTCCTCTTAAATATGAGGACAGAAGTGCAATCGGGGCCTGCGCTGCTGAGCAAGGCATCTCTCTTCTTCTTGAAAGAGcGAGGCTGTTGCAGGCAGACCACCCGACACGCTCAGGGATGATCCCCGGCTCGTGGCAGCACCGCATGAAGCTGCAGCTCTTCCTCAAAGCCTCCAAGGCCTACTACGTCCTGTCTGATGCTGCCACTAACTTGCTGAAGTACGGCCGAGCCCTGCGCTACATCAAGCTATCGCTGCAGTGTTACGATGCCTATTGTTCAGTGAGCGGTACACTGCACCCGCAGGTGCTGCTGTTTCACAGCCAGTGCCTGTCTCTGTGTGGGGACATCCAGCTGATGTTGGCACAGAATGCCAACAACAGAGCAGCTTACCTGGAGGAATACAGCTACCAGACCAAAGAGGACCAGGAGATCCTGCACAGCCTGCACAGAGAGAGCAGCTGCCAGGCCTTCAACATGGCAGCAGACCTGGCCATGGACCCGGAGTACCAGCTGTTTGTTAGCAGTAAGTGCTATGAGGCAGCATATGAACTGCTTGTCTCTGAGGCTCTAAAAGATCACGCCTCAGATCAGCTGGCTCAGGTGCTCAAAAGGCTGGGAAACATCCGCAACGAGATGGGAGTCTACTATATGAAccaggctgcagccatgcaGACTGAGAAAGAagTGAAGAAGTCGGTGTCCGTAGTAGAGCAGGAGATGTGGAAAAAGAGTTTTGCCTTCTTTGAGAAAGGCATGAAGGACTTTGGGGACATTGGGGACAGCACCAACACAGCCTTGCTgctgtgtaatactggcaggcTGATGAGAATCTGTGCTCAAGCCCACTGTGCCCTGTCTTCCGACCAGAGCAGAGGGGAGTTCTCACCTGAAGAGGCCCTCTACTACAACAAGGCCATAGATTACTACTTGCGGGCTATGAAGTCTCTGGCAAGCCGAGAGAACCATTCAGCAGTGTGGGACAGTGTAATCTGGGAGCTGTCCACTACCTATTTTACCCTGGCTACACTGCTACAGGACTACGCCCCACTGTCCAGGAAGGCCCAGGAGCAGATTGAGCGGGAGGTGACCGAGGCGATGATGAAGTCCCTGAAGTACTGCGACCTGCAGACTGAGTCGGCTCGTCAGCCGCTCTACCAGTACAGAGCTGCCACCATCCACCACCGCCTGGCCTCTATGTACCACAGCTGCTTCCGCAACCAGGTGGGGGATGAACACTTGAGGAAGCAGCATCGCAGCTTGGCAGAGCTTCACTACAGCAAGGCTGTCGGTTTGTTTCTCAGCCTCAAAGATGCACCCTGTGAGCTGCTCCGCACGCTCCTGGAGAGGGTGGCCTTTGCTGAGTTTACCATGGCAGgtCAGAGCAGCAACGCGGCTAAGCTGAAGAGCCTGACCGGAGCAGTAGAGATCATGACTGAAACACGCCATGCtttccagctgattcagaaAGAGCTGCTGGAGGAGCAGACAGAGTTGAGTGAACCAGACCCCGCTAAATCAGCAGAGTCTCCTGATGTGGCTGCTGGTCCCTCCTCAGGACTGAACCTCCAGGAAGTGATGAAGTTAATTGCCGTGTTTGAGCCGAGTTTCtccttcctgctgctgcagctgatcAAACTGATGACGACGATGAAACGGAAACCAAGCAATAAGGACGAGGATCTGTTGAAAACCTATAAGAATGTGTACTCCAAGCTGCTGCGAGCTGAGAAAAGCGCACCTCTCCACAGCCGTGTCGAGCTCCACATAGAGCTTCTGCAGCAGCTGACCCCGCAAACAGGAAGTGACGACACGGGTACGCCTTCATGATAATGATAAAAACCATAGCAAGGAAGAAACTCAAGACCTTAACTCTTCTCCAAGCCCCACTCTGGGGAAGACTTGGAAGACTCAACAACTGTCTTCTCAAAAATGCTGTGACAGAATACGATGATTTATAGACACCATTATTAATAGGCACATGCTCAGGCAACACCGTCCCACTCTGAATTACAGTTTCAAAGCTAATTTCACCTCTTGcgcctttttaaaaacaaatttcatCTTTTTCTAACATTTGCATCACGGGTTTTGAATTGTACATTTATGTGAAAAAGAGTTGTAAATTCAGAagatattatttaaattttcttATTGCTTAAGCAGTTATGGGTCACATGTGAAGCTCCTATGTGTAGGATTTGTTGTTGAATGTACCAAACATCACCTGGATTGCCTCATTTTTCTACAAACAAAAACCTATGGCATAAGAAAGATTTCAAAATGGTATAATCGTGTATAACTTCTACACACAGGGGcttaaaaagagagaaatgatTTAGCACATGCTCACAAAAGTGGTGATTCATCTGGATACAATTGGTATTTTTGATATTCAACAATACCAATAATGCTGTGAATAAAATAGATTGAAGTGTGACTGAAGGCTGACAAGTTAAAATAAGATCAAAAGTGTTATTTGCTTTCCAAAACAACAGTGTGCAATAGTTTGGCAACATTCAATGCAAACTCAGAGGCTATTCTTGTCCACATGgatgtatgtatacatgtgaGTTTATATCAGCTTGGTTTGCTGTGacgtgaaaataaaaaaggtttttcaaTTTTA

Function

symbol description
edrf1 Predicted to be involved in positive regulation of transcription, DNA-templated. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1).

NR:

description
erythroid differentiation-related factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783611.1 True 4927 mRNA 0.49 25 14211177 14223939

Neighbor

gene id symbol gene type direction distance location
zranb1b LOC103364011,LOC100705114 coding upstream 80919 14107531 ~ 14130258 (+)
abraxas2 fam175b coding upstream 104399 14090227 ~ 14106778 (+)
LOC120547617 LOC104928877,LOC103364007,LOC104955506,LOC102779318,LOC101473811 coding upstream 240605 13964300 ~ 13970572 (+)
hmx2 hmx2 coding upstream 347871 13861100 ~ 13863306 (+)
hmx3a LOC100699350,LOC103364005,LOC102290348,LOC101473229,LOC102196513 coding upstream 355410 13831553 ~ 13855767 (+)
LOC120548387 ptpre,LOC103357678,LOC104929420 coding downstream 262191 14486130 ~ 14509420 (+)
gnrh3 LOC104956640,LOC103357677 coding downstream 287261 14511200 ~ 14512357 (+)
mgmt mgmt coding downstream 351779 14575718 ~ 14595660 (+)
ppp2r2d ppp2r2d coding downstream 459128 14683067 ~ 14688051 (+)
smndc1 smndc1 coding downstream 470981 14694920 ~ 14717192 (+)
G193709 NA non-coding upstream 239062 13971790 ~ 13972115 (+)
G193701 NA non-coding upstream 264826 13946073 ~ 13946351 (+)
G193661 NA non-coding upstream 456381 13752743 ~ 13754796 (+)
G193395 NA non-coding upstream 1278323 12857800 ~ 12932854 (+)
G193393 NA non-coding upstream 1366797 12844072 ~ 12844380 (+)
G193837 NA non-coding downstream 285660 14509599 ~ 14510920 (+)
G193847 NA non-coding downstream 467412 14691351 ~ 14692096 (+)
G193902 NA non-coding downstream 594911 14818850 ~ 14820963 (+)
LOC120548320 NA non-coding downstream 684674 14908613 ~ 14909362 (+)
G193907 NA non-coding downstream 687533 14911472 ~ 14911724 (+)
G193730 mettl10 other upstream 134720 14074642 ~ 14076457 (+)
chrm3a LOC101465548 other upstream 1001967 13123018 ~ 13209210 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other upstream 1837906 12351323 ~ 12373271 (+)
sf3b5 sf3b5 other upstream 1920647 12287013 ~ 12290530 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other upstream 1932802 12246951 ~ 12278375 (+)
zgc:91976 sgms1 other downstream 985900 15209839 ~ 15233875 (+)
LOC120548468 NA other downstream 1571031 15794970 ~ 15803515 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other downstream 1688823 15912762 ~ 16129667 (+)
G194185 NA other downstream 2129252 16353191 ~ 16353831 (+)
trmt2b trmt2b other downstream 2396085 16620024 ~ 16625097 (+)

Expression


Co-expression Network