LOC120547947


Basic Information

Item Value
gene id LOC120547947
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4613923 ~ 4615961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783773.1
GACAAAACATCAGACATTGGTGTAGGGAACTCATTCagtgtcttcagctgtcaaAGGTTTCACTCTGAAGAATGGGAGAGGTCTATGTTAATGACACTTTACAGGACATGAGGGATTATTACAACAGCAACTTCAACgactttgaatttaaaaaaatactattcATCATAAATGTGGTGACATGCATAATCATTAGTATCGGACTTCCTTTGACCCTCGTGGCCATCTATGCTCTTTATTCTCTGGTGGGAAAGTATAATGTTGCTCCGATCTACGTCATCAACCTTCTCATTTCTGACCTcattcagttctgctgcttgatCGGTTTGGTGGCAAAATCTGAGGACCAGAAAATAACCGTTGTTATTTACTTCTCTAGTCTGTTGGCCAGTGTTTACTTCATGGTGTGCATCGCCCTGGAAAGgtatttggtcatcGCCTGCCCACTGTGGTACCGCTTCAGACGATCCATCAAGAGCTCCGTGGTGGTCTGTGTCCTGGTCTGGGTTTTTCCTCTTATCTTTTTCATCGGTTATGTATTTTGGTATGTTCCAGATTTTATAATGAATATCACTTTGTTCATATTTTTCCTCCTTCCCCTCCCACTGCTCATATTCTTTCTGCTTGGGACCCTTAAAGCCCTGTCTGCTTCCATCTTAGTTACTGCTGATGAAAAACGACGAATTGTGGCAATGTTGGTCCTGCTGCTGCTTATTTACACGCTGCTGTCTCTACCCAGAATCATCATGCTTCTgaaaaaacatgacataaatGACATCCCCCTCCACATCCTGTGTGATGTGTTTCTTAAGTTGAGTCCTCTTGCAGACTTAGTTCTGTATGTTTTCATGAGGAAAAGGGCCATAGACAAGCTTTTGGCCTATGTGTGTTGTTGCAGAATGGACAGCAATGATGTCAGCAGTTCAACAGTATGA
>XM_039783774.1
CATGTTTCACGTCTCTTTTTATAACCTGATCTCCTAAACAGGTTTCACTCTGAAGAATGGGAGAGGTCTATGTTAATGACACTTTACAGGACATGAGGGATTATTACAACAGCAACTTCAACgactttgaatttaaaaaaatactattcATCATAAATGTGGTGACATGCATAATCATTAGTATCGGACTTCCTTTGACCCTCGTGGCCATCTATGCTCTTTATTCTCTGGTGGGAAAGTATAATGTTGCTCCGATCTACGTCATCAACCTTCTCATTTCTGACCTcattcagttctgctgcttgatCGGTTTGGTGGCAAAATCTGAGGACCAGAAAATAACCGTTGTTATTTACTTCTCTAGTCTGTTGGCCAGTGTTTACTTCATGGTGTGCATCGCCCTGGAAAGgtatttggtcatcGCCTGCCCACTGTGGTACCGCTTCAGACGATCCATCAAGAGCTCCGTGGTGGTCTGTGTCCTGGTCTGGGTTTTTCCTCTTATCTTTTTCATCGGTTATGTATTTTGGTATGTTCCAGATTTTATAATGAATATCACTTTGTTCATATTTTTCCTCCTTCCCCTCCCACTGCTCATATTCTTTCTGCTTGGGACCCTTAAAGCCCTGTCTGCTTCCATCTTAGTTACTGCTGATGAAAAACGACGAATTGTGGCAATGTTGGTCCTGCTGCTGCTTATTTACACGCTGCTGTCTCTACCCAGAATCATCATGCTTCTgaaaaaacatgacataaatGACATCCCCCTCCACATCCTGTGTGATGTGTTTCTTAAGTTGAGTCCTCTTGCAGACTTAGTTCTGTATGTTTTCATGAGGAAAAGGGCCATAGACAAGCTTTTGGCCTATGTGTGTTGTTGCAGAATGGACAGCAATGATGTCAGCAGTTCAACAGTATGA
>XM_039783775.1
GACAAAACATCAGACATTGGTGTAGGGAACTCATTCagtgtcttcagctgtcaaAGGTTTCACTCTGAAGAATGGGAGAGGTCTATGTTAATGACACTTTACAGGACATGAGGGATTATTACAACAGCAACTTCAACgactttgaatttaaaaaaatactattcATCATAAATGTGGTGACATGCATAATCATTAGTATCGGACTTCCTTTGACCCTCGTGGCCATCTATGCTCTTTATTCTCTGGTGGGAAAGTATAATGTTGCTCCGATCTACGTCATCAACCTTCTCATTTCTGACCTcattcagttctgctgcttgatCGGTTTGGTGGCAAAATCTGAGGACCAGAAAATAACCGTTGTTATTTACTTCTCTAGTCTGTTGGCCAGTGTTTACTTCATGGTGTGCATCGCCCTGGAAAGgtatttggtcatcGCCTGCCCACTGTGGTACCGCTTCAGACGATCCATCAAGAGCTCCGTGGTGGTCTGTGTCCTGGTCTGGGTTTTTCCTCTTATCTTTTTCATCGGTTATGTATTTTGTTACTGCTGATGAAAAACGACGAATTGTGGCAATGTTGGTCCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783773.1 True 935 mRNA 0.42 4 4613923 4615961
XM_039783774.1 False 920 mRNA 0.42 3 4614701 4615961
XM_039783775.1 False 590 mRNA 0.43 5 4613923 4615732

Neighbor

gene id symbol gene type direction distance location
LOC120548456 NA coding upstream 12657 4503362 ~ 4601266 (+)
LOC120547943 NA coding upstream 35562 4575583 ~ 4578361 (+)
LOC120547941 NA coding upstream 65149 4544612 ~ 4548774 (+)
LOC120547944 NA coding upstream 102111 4487507 ~ 4511812 (+)
LOC120547940 NA coding upstream 152205 4458016 ~ 4461718 (+)
ccdc172 NA coding downstream 774458 5390419 ~ 5427836 (+)
LOC120548190 LOC102080562,LOC102201633 coding downstream 1163228 5779189 ~ 6190313 (+)
setd4 setd4,LOC102797995 coding downstream 1680286 6296247 ~ 6308199 (+)
LOC120548010 itsn1 coding downstream 1752076 6368037 ~ 6377416 (+)
pdxkb LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 coding downstream 1785070 6401031 ~ 6431130 (+)
LOC120547946 NA non-coding upstream 4878 4608142 ~ 4609045 (+)
G191918 NA non-coding upstream 190116 4384230 ~ 4423807 (+)
G191909 NA non-coding upstream 197636 4348505 ~ 4416287 (+)
G191890 NA non-coding upstream 396870 4216818 ~ 4217053 (+)
G191887 NA non-coding upstream 427266 4186404 ~ 4186657 (+)
G191960 epas1a non-coding downstream 106746 4722707 ~ 4760414 (+)
G191962 NA non-coding downstream 110613 4726574 ~ 4773778 (+)
G191981 NA non-coding downstream 213658 4829619 ~ 4830101 (+)
G192035 NA non-coding downstream 267209 4883170 ~ 4883655 (+)
G192037 NA non-coding downstream 267831 4883792 ~ 4884103 (+)
LOC120548449 NA other upstream 245597 4367151 ~ 4368326 (+)
arfgef3 arfgef3,LOC102791283 other upstream 266344 4250605 ~ 4347579 (+)
G191903 NA other upstream 325279 4287897 ~ 4288644 (+)
LOC120547552 NA other upstream 1274838 3163824 ~ 3339085 (+)
LOC120548437 NA other upstream 1502965 3093967 ~ 3110958 (+)
LOC120548511 LOC101485366,LOC100693926 other downstream 13096 4629057 ~ 4678348 (+)
G192040 LOC104951079 other downstream 270415 4886376 ~ 4887023 (+)
atrnl1a LOC102310066,LOC100692310,LOC101487275 other downstream 287761 4903722 ~ 5248736 (+)
si:dkey-22n8.3 LOC103376236 other downstream 1404161 6020122 ~ 6396899 (+)
itsn1 itsn1 other downstream 1708554 6324515 ~ 6360991 (+)

Expression


Co-expression Network