LOC120547971 (LOC102778848,LOC102194630,LOC102290574,LOC101476901,LOC100711709)


Basic Information

Item Value
gene id LOC120547971
gene name LOC102778848,LOC102194630,LOC102290574,LOC101476901,LOC100711709
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 7942709 ~ 7947821 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783820.1
ataaacatgtcgCTAACGAATTATTATTCCATGATGGGGATCCAGACTGAGGAGCCGTACGGTGCACATTTCATCCCGGGAGGCTTGCAGGGTTCGACGGCCGGCTGCGCAAAGCCAGTCCGAAGAGCGGAGGATGAGGAGGGGGTCCCCGGCTCACACGTTCcagatttttcacatttttccaaCAAACAAACGAGCTTAAACGGCTTTTCTCCCTGGGCAAACAACTCTACTTCGTCTTCGCCCTCTTCTCCGCAGCTGCAGTCCACCCCCGGTCTTTTTCACCCACATCACCTCCTGAGCCACCACCACCCATACTACGACCCgcagacgcagacacacaccGAACACCTCGCATCCGCGGCCGCTTCCGAGAGCAGGTTCGTCCGCTGTTGGGAGGGGGCGACTCCCACCTCGGAGACTTCTCTGTCACATGCGTCGGTCGGTTTTCCCGTGTGTGTCCCCGCTCAGGGTGACCTTTCCAATCTGAGCCCGAGGTATGAGGCGGTTAAACCTGAGAGTTCACCGCCGTCACACAACAGCCCCGAAGATTCCAGCTTCGCCAGCCCGACTGAGGTGGTCCTCGAGCGGCTTGGCACGGCGAAGGAGCTGGGAAGGAAACCGGAGCCCAAAaaagtggaggaggagagaaaaacaaagcaaCAGCTTGACCCGGAAAATCCAGCAGCTAGTTGGATCTATGCCAAGTCCACCCGGAAGAAAAGGTGTCCATACACCAAACACCAGACCCTGGAGCTGGAGAAGGAGTTTCTCTACAACATGTACCTGACCAGGGACCGGCGCCTGGAGGTGGCAGGACTCTTAaatctgacagagagacaggttaaaaTCTGGTTCCAGAACAGACGGATGAAGATGAAGAAGCTGATGATCCGGGAGAGGAGGAGTGTGAATGAATGATGGATTTGGAGAAGAGGCccagggatgttttttttttcttcttctttcttccagGATAGGTTTTGGAGGTGGTGATGTTATAACTGATAAGAGAAACGCAGTGCTCCAAGACGCCCAACATCTTTAACATGAGCAGCTGTTACTAAGCAACGGATTGTGGAGCTATAACATGGCTGCCCTGGTGAAACTCTGCAGTGGTGAAACTCTGCAGGGGAGACCAGGATGTGTTGTAACACTTTTACAAAAAACTACTCCTTTCAATGTCTTTTGGCCTTTTTTCATGTTAGAGCTTCTGAAATCGGGTTCTTCCTTCTGCACGTTAGTCAACCTGTAACCTGAGGTACTTGTAAATAATGCTTCAAAAGTTCAAATTTACAGAAAAATCCATAAAttgaattttaaaaaaacaaccacataCTAGAAAGATGATATCAAAGACTTTGCTGATTGTAAAACATCTGTTTTTGACAAGGCTGCAATCTCACATGTCCAAAACTGAAACTACTTGACACATACTTGACTTCACATAAATTGTCTGTGCTTTCTGCCAAAATCTGAATTGCGTTTTATGATTTAATGCTAAAACTATTGTCCTCATAAAAACTGCTTTCAGTATGTCAGACGTGACTGTGCTACATCTGCTATGGCCTGAAATAGTCACAGAGCTTTtaaaaatttgaaataaaaataccCTAAGCAAACAAAGAAGCCTGACACGTAATCATAaccataataaaagaaaataaaagagataagagagtgagacagaatCAGACAGATTAGGTGGTAAATGATGTAAATTGATGCATTTATTGATCCCTTTGTTAGCTCTAATTTAGAAGGTGGAATCTGTTAATATTCTTGTGTGATTTGCATGATCCAGCGTTCTTTAAGACACAAAGCTTTACTGTGGCTGGActtacaatcacaaaaaatgTGAATCTATCAAAACGGCAACATTTCACACAAGATATAAAAGGTGAAATTGCTGTTTTCACATGTGAAATATATGAAAATAACATTGAATGATCTTTTCACATGTGAActttctgaaaacatgtttcCAAATGTGAATTTTGAACACGTGAAATGTGTTTCACATGTGATAAATTCTGCTCCTTTGCAAAGGAAAGTTAGTTCAAACCAGACTTTTAAACTGAAACCTCCAACATCCTTTAGTGTGTAAATTAACAACATAAGCATACAAGTTATTGAAGATGGATtcatgcacacaaaaactgaCTGACTCCGGATGCTCTGCCATATTGGCTGTAGCTCCAATACTGCTTTTACATGACCTATTGTCACCATAGAAGACAAAACCCTGCAAAAAGTTAAGATTGTCAGTGTTTAGGAGCACTTTATCTCTCCAGGGCTAAAGATGTAGCCCAATGTGTAGGGATCAAATGGCTGAGATTAGTGGCATGTCCATCCACACCCTTATAGATGATTACACAGCTTGTAATTGTAACACTGGAACAGAAACGTATGTCAGGTTTGCAACAGTTTAACTATAAAATAAACCAAGATGCAAATTATGAaatgaacacaaaaaaatcaacagTAATACCAAAATACTTACTTACCAATGTATTTCAGGTGTGTCCGGGTGGGTGATGCTGTCAGAGAGGCACACACAGGTTTTTAATCTAGCTGCTGATTGGATCAATTCTCTGTGTTACAACCAACCCCTGTCTCCCTGAAAATAATATCCAAAAGGGACGTTtatcattttgtattttaagaAAAGAACAAGCTtccttgttattattattattattattattattttttataaaatgtgcaTGTATAGCCGAATGGACGTATTTGTTGTTATCGTTGCTGTGTTGTATAAGTCTATCTGTTGTTAATGTGGGATACATGGAGATCatatgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctatctAAGCTTTCTGTTACCTCCTAGAATAAACAGCTGCATACAGTTCATGTGAGACGTTCTATGTACAAACAACGCACAACCTATTTTTCATTTTAGAAGGTATACGATAACATCAAGTTAAAATATTAGAGGAATATTATCAGTACTTTAGTGTTTTTTTCACGAGGATGAGATGGACTCAACACCAGCCCATTCTCCCTGGGAGAAAAGGGAAACCCAACAGGCTATGTTAGCCTACTGAGATTGAACTGGAGGCATGATGTGTTGTGATGATGCGAGGCCTTCACCTGCTCTCATTTAGCCTCAATATGCTGCTCGTGGGGatctttttgaaaatgaaataaa

Function

NR:

description
PREDICTED: homeobox protein Hox-D9b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783820.1 True 3279 mRNA 0.42 2 7942709 7947821

Neighbor

gene id symbol gene type direction distance location
LOC120547970 NA coding upstream 4213 7933125 ~ 7938496 (+)
chrna1 chrna1,LOC103363491,LOC446087 coding upstream 36964 7887988 ~ 7905745 (+)
cdh11 cdh11 coding upstream 152491 7693588 ~ 7790218 (+)
supt3h supt3h coding upstream 1082523 6842493 ~ 6860186 (+)
LOC120547615 LOC102195517,LOC102294040,LOC101480586,LOC100690426,LOC101068904 coding upstream 1104719 6829571 ~ 6837990 (+)
trnaq-cug_15 NA coding downstream 3296 7951117 ~ 7951188 (+)
LOC120548260 LOC102194925,LOC102289369,LOC102779125,LOC100534467,LOC101476625,LOC104955261 coding downstream 19551 7967372 ~ 7970313 (+)
mtx2 mtx2 coding downstream 24610 7972431 ~ 7981678 (+)
cdh5 LOC104953929 coding downstream 72839 8020660 ~ 8057884 (+)
LOC120548392 LOC104932692,LOC100711168,LOC102780655,LOC102196724,LOC101475056 coding downstream 182761 8130582 ~ 8137806 (+)
G192375 NA non-coding upstream 35769 7906570 ~ 7906940 (+)
G192359 NA non-coding upstream 107002 7835423 ~ 7835707 (+)
G192333 NA non-coding upstream 723685 7128852 ~ 7219024 (+)
G192329 LOC108281047 non-coding upstream 819531 7122200 ~ 7123178 (+)
G192283 cdc5l,LOC101487762 non-coding upstream 1079898 6860326 ~ 6862811 (+)
G192412 NA non-coding downstream 125960 8073781 ~ 8074959 (+)
G192413 NA non-coding downstream 177097 8124918 ~ 8125993 (+)
LOC120548141 NA non-coding downstream 178897 8126718 ~ 8129363 (+)
G192464 NA non-coding downstream 421557 8369378 ~ 8377699 (+)
G192530 NA non-coding downstream 910170 8857991 ~ 8904877 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 1138157 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 1153623 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 1436858 6485581 ~ 6505851 (+)
si:dkey-22n8.3 LOC103376236 other upstream 1545810 6020122 ~ 6396899 (+)
bean1 bean1,LOC102779979 other downstream 118515 8066336 ~ 8119063 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 1166835 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 1548970 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 1658704 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 1706083 9653904 ~ 9673252 (+)

Expression


Co-expression Network