chrna1 (chrna1,LOC103363491,LOC446087)


Basic Information

Item Value
gene id chrna1
gene name chrna1,LOC103363491,LOC446087
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 7887988 ~ 7905745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783877.1
ATGAACCTCTCTAAGGTCCAGATCTTTCTGGCATGGATCCTCGGTGTACTTGCCGGTCCAGTGTTCTGCTCAGAGGATGAGACTCGTCTGGTGAAAACCCTATTTACTGGTTACAACAAGGTGGTACGTCCCGTTAACCACTTCAGTGAAGCCGTAGTGGTCACCGTGGGACTGCAGCTAATACAGCTTATCAGTGTGGATGAAGTTAACCAGATTGTGACCAGTAATGTCCGTCTCAGACAGCAATGGCTAGATGTGAACCTGAAGTGGAATCCAGATGAATACGGAGGCATCCGGAAGATAAGAGTCCCTTCAACCGACATATGGAAACCTGACCTGGTGCTATACAACAACGCTGATGGTGACTTTGCCATCATCCATGAAACTAAAGTCCTGTTGGAGCACACTGGGATGATAACATGGAACCCTCCAGCCATCTTTAAGAGTTACTGTGAGATTATCGTCCTCCATTTCCCATTTGACCTGCAGAACTGTAGCATGAAACTGGGAACCTGGACATACGATGGAAAGCTGGTCGTCATCAATCCAGACAGTGATCGGCCTGACCTCAGTAACTTTATGGAGTCGGGTGAATGGGTGTTAAAGGACTACAGGAGCTGGAAACACTGGGTTTACTACACCTGCTGTCCCGACACACCATACCTTGACATCACCTACCATTTCCTGATGCTGCGGCTGCCTCTCTATTTCATCGTCAACGTCATCATTCCCTGCATGCTGTTCTCTTTTCTCACCGGACTGGTCTTCTACCTGCCTACTGACTCCGGTGAAAAGATgactctctccatctctgtcctgCTGTCTCTGACTGTCTTTCTGCTGGTTATTGTGGAGCTGATCCCTTCCACTTCCAGCGCTGTGCCTCTCATAGGGAAATACATGCTCTTCACAATGGTGTTTGTCATCGCCTCCATCATCATCACCGTCATCGTCATCAACACACATCACCGCTCGCCCAGCACGCACACCATGCCCGCCTGGATCCGCAAGGTCTTCATCGAAACCATTCCCAACATGATGTTCTTCTCAACAATGAAGCGTCCCAGTCAGGAGATCCGGCAGAAGAGGTTGTTCCCAACTGACATGGACATCTCTGACATCTCAGGTAACCCCACCCCCACCAGTGTCACCTACCAGTCCCCCATCTCTAAAAACCCTGATGTCCGCAGCGCCATTGAAGGGGTGAAATACATCGCTGAGACCATGAAATCAGACGAGGAATCTAACAATGCAGCAGAGGAGTGGAAGTTTGTTGCCATGGTTTTGGACCACATCCTGCTCTGTGTTTTCATGGCCGTGTGCATCATCGGGACGCTTGCCGTCTTTGCTGGGAGACTCATCGAGCTCAACATGCTGTAGAGGCCTGACCCACGAAGGAGTACGTCTGTCGTCACACTTGGAGAGGCATCAGAACCACGTTTATCATTGGTTGAGGTTGTGTTTGCTCTCTTTTTCCCCCTCACACACGTACAAAGTTTGAGTTCATTTTCAAATCACTCTTGTGTCGCCTTTGAATGTGCACGTTTGTATTTACTGAAATTGGGGAGACTGCAGTAAAGCTTGCATTTTAAAGGCATGAGTCTTGTGATCTACATGGGTCATACTTGAA
>XM_039783878.1
ATTAATCAGCCTATACACACCTACACAGTCTTgggaagaggtctaatcagccacacTAACTGAAAACACAGTTGTTCAGACTAGGACCTTTAAATAATTATGAAGATGGAAATAAAACAACTAAACTTAGCTTTATCAGTAAATTAGTAGACCAGATGGTTTAAAGTTTCCCAATGAAGCGGATGCATCAGTAAGATCGGAATCCTTTGTGTAGGTCTTTTGAGGGGTATGCTACCCATACTTTAGAACCAGGTTACGACAAGCATATCGTCTCAGCACGGCGGCCAGAAAACACATTAGGCAAAATGCAAATACAAGATGAAGTTAACCAGATTGTGACCAGTAATGTCCGTCTCAGACAGCAATGGCTAGATGTGAACCTGAAGTGGAATCCAGATGAATACGGAGGCATCCGGAAGATAAGAGTCCCTTCAACCGACATATGGAAACCTGACCTGGTGCTATACAACAACGCTGATGGTGACTTTGCCATCATCCATGAAACTAAAGTCCTGTTGGAGCACACTGGGATGATAACATGGAACCCTCCAGCCATCTTTAAGAGTTACTGTGAGATTATCGTCCTCCATTTCCCATTTGACCTGCAGAACTGTAGCATGAAACTGGGAACCTGGACATACGATGGAAAGCTGGTCGTCATCAATCCAGACAGTGATCGGCCTGACCTCAGTAACTTTATGGAGTCGGGTGAATGGGTGTTAAAGGACTACAGGAGCTGGAAACACTGGGTTTACTACACCTGCTGTCCCGACACACCATACCTTGACATCACCTACCATTTCCTGATGCTGCGGCTGCCTCTCTATTTCATCGTCAACGTCATCATTCCCTGCATGCTGTTCTCTTTTCTCACCGGACTGGTCTTCTACCTGCCTACTGACTCCGGTGAAAAGATgactctctccatctctgtcctgCTGTCTCTGACTGTCTTTCTGCTGGTTATTGTGGAGCTGATCCCTTCCACTTCCAGCGCTGTGCCTCTCATAGGGAAATACATGCTCTTCACAATGGTGTTTGTCATCGCCTCCATCATCATCACCGTCATCGTCATCAACACACATCACCGCTCGCCCAGCACGCACACCATGCCCGCCTGGATCCGCAAGGTCTTCATCGAAACCATTCCCAACATGATGTTCTTCTCAACAATGAAGCGTCCCAGTCAGGAGATCCGGCAGAAGAGGTTGTTCCCAACTGACATGGACATCTCTGACATCTCAGGTAACCCCACCCCCACCAGTGTCACCTACCAGTCCCCCATCTCTAAAAACCCTGATGTCCGCAGCGCCATTGAAGGGGTGAAATACATCGCTGAGACCATGAAATCAGACGAGGAATCTAACAATGCAGCAGAGGAGTGGAAGTTTGTTGCCATGGTTTTGGACCACATCCTGCTCTGTGTTTTCATGGCCGTGTGCATCATCGGGACGCTTGCCGTCTTTGCTGGGAGACTCATCGAGCTCAACATGCTGTAGAGGCCTGACCCACGAAGGAGTACGTCTGTCGTCACACTTGGAGAGGCATCAGAACCACGTTTATCATTGGTTGAGGTTGTGTTTGCTCTCTTTTTCCCCCTCACACACGTACAAAGTTTGAGTTCATTTTCAAATCACTCTTGTGTCGCCTTTGAATGTGCACGTTTGTATTTACTGAAATTGGGGAGACTGCAGTAAAGCTTGCATTTTAAAGGCATGAGTCTTGTGATCTACATGGGTCATACTTGAA

Function

symbol description
chrna1 Enables cation channel activity. Contributes to acetylcholine binding activity and acetylcholine receptor activity. Acts upstream of or within several processes, including chemical synaptic transmission; chondrocyte intercalation involved in growth plate cartilage morphogenesis; and skeletal muscle fiber development. Part of acetylcholine-gated channel complex. Is expressed in adaxial cell; musculature system; and somite. Used to study congenital myasthenic syndrome. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 1A and congenital myasthenic syndrome 1B. Orthologous to human CHRNA1 (cholinergic receptor nicotinic alpha 1 subunit).

NR:

description
PREDICTED: acetylcholine receptor subunit alpha

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783877.1 False 1630 mRNA 0.49 10 7887988 7905745
XM_039783878.1 True 1749 mRNA 0.47 9 7897153 7905745

Neighbor

gene id symbol gene type direction distance location
cdh11 cdh11 coding upstream 97770 7693588 ~ 7790218 (+)
supt3h supt3h coding upstream 1027802 6842493 ~ 6860186 (+)
LOC120547615 LOC102195517,LOC102294040,LOC101480586,LOC100690426,LOC101068904 coding upstream 1049998 6829571 ~ 6837990 (+)
LOC120548221 NA coding upstream 1215964 6596041 ~ 6672024 (+)
LOC120547793 LOC108247470,LOC106529920,LOC107096283,LOC102227626 coding upstream 1304250 6553886 ~ 6583738 (+)
LOC120547970 NA coding downstream 27380 7933125 ~ 7938496 (+)
LOC120547971 LOC102778848,LOC102194630,LOC102290574,LOC101476901,LOC100711709 coding downstream 36964 7942709 ~ 7947821 (+)
trnaq-cug_15 NA coding downstream 45372 7951117 ~ 7951188 (+)
LOC120548260 LOC102194925,LOC102289369,LOC102779125,LOC100534467,LOC101476625,LOC104955261 coding downstream 61627 7967372 ~ 7970313 (+)
mtx2 mtx2 coding downstream 66686 7972431 ~ 7981678 (+)
G192359 NA non-coding upstream 52281 7835423 ~ 7835707 (+)
G192333 NA non-coding upstream 668964 7128852 ~ 7219024 (+)
G192329 LOC108281047 non-coding upstream 764810 7122200 ~ 7123178 (+)
G192282 LOC103387761,LOC103476592,LOC106529247,LOC108242979,LOC102217296 non-coding upstream 953310 6834017 ~ 6934678 (+)
G192283 cdc5l,LOC101487762 non-coding upstream 1025177 6860326 ~ 6862811 (+)
G192375 NA non-coding downstream 825 7906570 ~ 7906940 (+)
G192381 NA non-coding downstream 2018 7907763 ~ 7952125 (+)
G192412 NA non-coding downstream 168036 8073781 ~ 8074959 (+)
G192413 NA non-coding downstream 219173 8124918 ~ 8125993 (+)
LOC120548141 NA non-coding downstream 220973 8126718 ~ 8129363 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 1083436 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 1098902 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 1382137 6485581 ~ 6505851 (+)
si:dkey-22n8.3 LOC103376236 other upstream 1491089 6020122 ~ 6396899 (+)
bean1 bean1,LOC102779979 other downstream 160591 8066336 ~ 8119063 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 1208911 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 1591046 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 1700780 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 1748159 9653904 ~ 9673252 (+)

Expression


Co-expression Network