plekha3 (plekha3,LOC102799655,LOC103387813)


Basic Information

Item Value
gene id plekha3
gene name plekha3,LOC102799655,LOC103387813
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6447144 ~ 6467228 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783940.1
CCCCACCAGTCTTCCGTAGAAAAGCTGCTgctttgttgacatttttttccctctcatCAGCTTACTGCCCACAAGTTAGCTGGTTACTTTATGAACATCTTAGCACAAACAAACCCTCAGTATGACATTATCCTGCCAACGCTGCAGCCAGTCAGCTCGCAAAACCCCAAAACAGTTCACACATTTTTAGACAACCAGCAGCTCACGATGGGGGTTATTTTCTAACCCGCTGTCACTCGACAGAGAGCGGacgctagctagttagcttgctGCTTCAGTTAGCTAGCCTGCAGAGCAACCATGGAGGGGATTCTGTACAAATGGACAAATTACATGACCGGCTGGCAGCCACGCTGGTTCGTCTTAGAGAATGGAGTCCTCTCTTACTACGACTGCGAGGACGACGTTGGTAAAGGAAGCAAAGGATCCATCAAGATGTCCGTGTGTGACATTAAAGtTCATCCGACAGATCCAACGCGCCTGGAGTTGATAATCCCCGGCGAGCAGCATTTCTACGTCCGAGCTGTGAACTCTGCAGAGAGACAGCGGTGGCTGGTGGCTTTAGGCTCGTCCAAGGCTGGAACACTGGACAGTCACAAACACAAAGGTCCAGACTGTCTGAAGACAAAGATGTCTGAACTTCGTCTGTACTGCGACCTCCTTGTCCAGCAGGTCCAAACGATCCAATCACAGCACACGGCCGACACAGAGGAAACGCCCACCTCGGAGgcCTCTCTCCTCAGTGCAACCTGTTCAACTTTCATTAAGACTTTGGAGGAGTGTATGACCCTCGCCAACCAGAGTTTGACCCCTGACCTTCGACCTCCTGAAAGGACGAAGAGGTCAATCAGTCACCCTGGAACATACAGCTTTGACAGgtCAGGTGTTCCTAAGGAGTACTTGAgtggaggtcaaaggtcaactcAGCGCAGGAACCGGACGTGCTCCGACAGCTCCGTTTATGACACTGAGCGGTGGGAGATGTCGGCCACAATCTTTCCTGCCCGCCTCAGGGTCCTGGAGGCGttgcagattgcagccaatcaccttcttcGCAGAGCGAATGatacgctgcagtctgcccttggcgttggcagcagcgtaccagatggtgatggagcaggtaTGCTGCCCGGTGTCAACGGTGACTCGTCTTCCATTCCTGAAGAGAGAGGAGGCGGCGTGAGCCCAAAGACCACGCTTACTGACACGGACACAGACCTGTCCATCTGAAGACCTGACGTCCATCGCAACCCTGCTGGACTCTTAGAGGACCAATTGACAGACATTTGATCTCCTCTAGGATTGTCCTCCTCGTACTTTTTCTCTGACGTCAGCTGGTTGCCAAACACACGCACTTTGGAATCATAATTCATCTTTTCCTGAAGGCTGTCTCGTGTTATGCGTTTCAGTTGCACAGCACACACTGGGGAGACAGAAAAGACAGCAGGAAAGAGCTGGACTTGAACCTGAGACAAAGGGAGGAAAAAGGTAGCCACATTTCACACTATGTACACACTCTTGGGGATGATGGTAGCCTTGGAGTTTGGATTTCCTGATACAGATCTGTGAACGAAGTGAATGAAAATAGTTGTTACTGTTCTGAGTGGCAACCAGATTAGGACTGTGATGTTGTAGTAGGCAGCTCCCCTGGCACGGTATCATTAAGAAAAACTGGATTAATTGTTCACTGCTTTAAATGGACCCGATAATATGCAGGAAGTGTTGAATTTTGGAGGTCATGTCTTCTGAGGTTTGTTTTCGTGGCGTTTTGATGGGATGTTGAAATCAAAAGCATCTTCTCGTATaatattttctgctttttcccccccacataCTCAAGAACTTGCCTAACTTTTTCTTTCCTTGGAAACTTGCCAAGCATCTTCTACATTCTTCTTCCAGGCCAGTTGCCTCTAGCTCTCTTCCCGTCAGCTTCTCATCTTTGATGTTGTCAGTAGTGACGTAGGCGGAGGATGAAACCAGACTGATAAAACGGCGTCTCTGAAGGTTCCTGAAGCTActtatctctgccacagtataCTCCCAGAGAGCTGAGGCTCTTCAGATGCCAATTTTTTTGCACAAATCTaatacattaaaggtcccatggcatgaaaatgtcactttatgagtttttttaacattaatatgcgtttcccccagcctgcctatg
>XM_039783941.1
CCCACCAGTCTTCCGTAGAAAAGCTGCTgctttgttgacatttttttccctctcatCAGCTTACTGCCCACAAGTTAGCTGGTTACTTTATGAACATCTTAGCACAAACAAACCCTCAGTATGACATTATCCTGCCAACGCTGCAGCCAGTCAGCTCGCAAAACCCCAAAACAGTTCACACATTTTTAGACAACCAGCAGCTCACGATGGGGGTTATTTTCTAACCCGCTGTCACTCGACAGAGAGCGGacgctagctagttagcttgctGCTTCAGTTAGCTAGCCTGCAGAGCAACCATGGAGGGGATTCTGTACAAATGGACAAATTACATGACCGGCTGGCAGCCACGCTGGTTCGTCTTAGAGAATGGAGTCCTCTCTTACTACGACTGCGAGGACGACGTTGGTAAAGGAAGCAAAGGATCCATCAAGATGTCCGTGTGTGACATTAAAGtTCATCCGACAGATCCAACGCGCCTGGAGTTGATAATCCCCGGCGAGCAGCATTTCTACGTCCGAGCTGTGAACTCTGCAGAGAGACAGCGGTGGCTGGTGGCTTTAGGCTCGTCCAAGGCTGGAACACTGGACAGTCACAAACACAAAGGTCCAGACTGTCTGAAGACAAAGATGTCTGAACTTCGTCTGTACTGCGACCTCCTTGTCCAGCAGGTCCAAACGATCCAATCACAGCACACGGCCGACACAGAGGAAACGCCCACCTCGGAGgcCTCTCTCCTCAGTGCAACCTGTTCAACTTTCATTAAGACTTTGGAGGAGTGTATGACCCTCGCCAACCAGAGTTTGACCCCTGACCTTCGACCTCCTGAAAGGACGAAGAGGTCAATCAGTCACCCTGGAACATACAGCTTTGACAGgtCAGGTGTTCCTAAGGAGTACTTGAgtggaggtcaaaggtcaactcAGCGCAGGAACCGGACGTGCTCCGACAGCTCCGTTTATGACACTGAGCgtaTGCTGCCCGGTGTCAACGGTGACTCGTCTTCCATTCCTGAAGAGAGAGGAGGCGGCGTGAGCCCAAAGACCACGCTTACTGACACGGACACAGACCTGTCCATCTGAAGACCTGACGTCCATCGCAACCCTGCTGGACTCTTAGAGGACCAATTGACAGACATTTGATCTCCTCTAGGATTGTCCTCCTCGTACTTTTTCTCTGACGTCAGCTGGTTGCCAAACACACGCACTTTGGAATCATAATTCATCTTTTCCTGAAGGCTGTCTCGTGTTATGCGTTTCAGTTGCACAGCACACACTGGGGAGACAGAAAAGACAGCAGGAAAGAGCTGGACTTGAACCTGAGACAAAGGGAGGAAAAAGGTAGCCACATTTCACACTATGTACACACTCTTGGGGATGATGGTAGCCTTGGAGTTTGGATTTCCTGATACAGATCTGTGAACGAAGTGAATGAAAATAGTTGTTACTGTTCTGAGTGGCAACCAGATTAGGACTGTGATGTTGTAGTAGGCAGCTCCCCTGGCACGGTATCATTAAGAAAAACTGGATTAATTGTTCACTGCTTTAAATGGACCCGATAATATGCAGGAAGTGTTGAATTTTGGAGGTCATGTCTTCTGAGGTTTGTTTTCGTGGCGTTTTGATGGGATGTTGAAATCAAAAGCATCTTCTCGTATaatattttctgctttttcccccccacataCTCAAGAACTTGCCTAACTTTTTCTTTCCTTGGAAACTTGCCAAGCATCTTCTACATTCTTCTTCCAGGCCAGTTGCCTCTAGCTCTCTTCCCGTCAGCTTCTCATCTTTGATGTTGTCAGTAGTGACGTAGGCGGAGGATGAAACCAGACTGATAAAACGGCGTCTCTGAAGGTTCCTGAAGCTActtatctctgccacagtataCTCCCAGAGAGCTGAGGCTCTTCAGATGCCAATTTTTTTGCACAAATCTaatacattaaaggtcccatggcatgaaaatgtcactttatgagtttttttaacattaatatgcgtttcccccagcctgcctatg

Function

symbol description
plekha3 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be active in cytosol and membrane. Orthologous to human PLEKHA3 (pleckstrin homology domain containing A3).

NR:

description
PREDICTED: pleckstrin homology domain-containing family A member 3

GO: NA

KEGG:

id description
K20313 PLEKHA3, FAPP1; pleckstrin homology domain-containing family A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783940.1 True 2176 mRNA 0.49 9 6447144 6467228
XM_039783941.1 False 2025 mRNA 0.48 8 6447145 6467228

Neighbor

gene id symbol gene type direction distance location
pdxkb LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 coding upstream 16014 6401031 ~ 6431130 (+)
LOC120548010 itsn1 coding upstream 69728 6368037 ~ 6377416 (+)
setd4 setd4,LOC102797995 coding upstream 138945 6296247 ~ 6308199 (+)
LOC120548190 LOC102080562,LOC102201633 coding upstream 256831 5779189 ~ 6190313 (+)
ccdc172 NA coding upstream 1019308 5390419 ~ 5427836 (+)
LOC120547793 LOC108247470,LOC106529920,LOC107096283,LOC102227626 coding downstream 86658 6553886 ~ 6583738 (+)
LOC120548221 NA coding downstream 128813 6596041 ~ 6672024 (+)
LOC120547615 LOC102195517,LOC102294040,LOC101480586,LOC100690426,LOC101068904 coding downstream 362343 6829571 ~ 6837990 (+)
supt3h supt3h coding downstream 375265 6842493 ~ 6860186 (+)
cdh11 cdh11 coding downstream 1226360 7693588 ~ 7790218 (+)
G192143 NA non-coding upstream 132043 6311396 ~ 6315101 (+)
G192125 NA non-coding upstream 156873 6272922 ~ 6290271 (+)
G192123 cbr1 non-coding upstream 159773 6268397 ~ 6287371 (+)
G192100 NA non-coding upstream 256302 6049398 ~ 6190842 (+)
G192103 NA non-coding upstream 604257 5842533 ~ 5842887 (+)
G192203 NA non-coding downstream 4311 6471539 ~ 6471881 (+)
G192205 NA non-coding downstream 10683 6477911 ~ 6478234 (+)
G192212 NA non-coding downstream 39093 6506321 ~ 6507436 (+)
G192214 NA non-coding downstream 42496 6509724 ~ 6510442 (+)
G192245 NA non-coding downstream 200156 6667384 ~ 6667710 (+)
si:dkey-22n8.3 LOC103376236 other upstream 50245 6020122 ~ 6396899 (+)
itsn1 itsn1 other upstream 86153 6324515 ~ 6360991 (+)
atrnl1a LOC102310066,LOC100692310,LOC101487275 other upstream 1198408 4903722 ~ 5248736 (+)
G192040 LOC104951079 other upstream 1560121 4886376 ~ 4887023 (+)
LOC120548511 LOC101485366,LOC100693926 other upstream 1768796 4629057 ~ 4678348 (+)
LOC120548025 ppp1r1c,LOC106939859 other downstream 18353 6485581 ~ 6505851 (+)
zc3h15 zc3h15 other downstream 308515 6775743 ~ 6789086 (+)
LOC120547751 LOC103371019,LOC107095977 other downstream 333286 6800514 ~ 6804552 (+)
bean1 bean1,LOC102779979 other downstream 1599108 8066336 ~ 8119063 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 2647428 9114656 ~ 9195416 (+)

Expression


Co-expression Network