hmx3a (LOC100699350,LOC103364005,LOC102290348,LOC101473229,LOC102196513)


Basic Information

Item Value
gene id hmx3a
gene name LOC100699350,LOC103364005,LOC102290348,LOC101473229,LOC102196513
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 13831553 ~ 13855767 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784029.1
TGTACCCGCGAAGGACGGTTCCCACCAGTAACTCTGTAACTTTGGTCAAATACAAAGTAATACAGTTGTCCACATagtatgaaatcgaaaaaaacgTTATTATTCAACATTTGTTATGTACATAATGAATCGACAACGCACATGCTTGCCATTTTTCTGTGTCTGGAGACCGAAGTTATGTTTTGATAGTCGACAAGGCCTAATACGTGCTACAGAGGATTGGATACACTTGGTCCTACAAGTACACCTGCTGTTGCCTGGCCATGTTTTAGGAGAACGCGTGTTTTGACGCGCTCTCCGGGTGTGAAATCGAGTCTTCGCGTTAAATCACTGAGAGAGATAAAACAGGGATTCCTCGCAGCCAGGATATCGACTGCCTGTAAGTCAGCCTTGCTTCCCCCCCCGCTTTTAATTCCTGCTTCCGTGGTCCTCTGCGTTCAGACCACAAACAGCGATGCCAGAGACAACGCAAGAGACGTGCGCTTCGGCCAAGGACTCTCCTTTTTTCATTAAGAACCTGCTGAACTGTGATAGCAAACCGTCCAAACCCAAACCCGTACTGGCTTCCACCAAGGCGGCCTTGGAGGGAGGATTTTCCCTTTCCCATGTCGGGGACTTCAACTTCCCACGCTTTGACCTGCCCGCGCAGAGGTTCAGTCTACCGGCTCACTACTTGGAGCGCACCTCGGCGTGGTGGTACCCCTACGCCCTCAGCTCATCCGTCCACCTACACAGAACCGAAGTCACCGACAAACTAAGAGCCAGAGACTCCTCTCCAACCTCGGGCACGGACAGAGACTCGCCGGACCTGGTTCTCAAATCCGAGCCAGACGTCAAAGACGACGACGAGGACGatgaacacaacaacaacaaaagtggCGACGAGATAATCCTGGAGGAGAGCGACACGGAAGAAGCCAAAAAAGACGAGCTGGGAGAGTGGAAGAAGAGGGACGACGACAAGAAGCCGTGCCGCAAGAAGAAGACGCGCACGGTTTTCTCCCGGAGCCAGGTGTTCCAGCTGGAGTCCACCTTCGACATGAAGCGGTACCTGAGCAGCTCGGAGCGGGCCGGCCTGGCCGCGTCTCTCCACCTGACGGAGACCCAGGTGAAGATCTGGTTCCAGAACAGGAGAAACAAGTGGAAgaggcagctggccgcggagctgGAGGCCGCCAACCTGAGCCACGCCGCGGCGCAGAGGATAGTCCGAGTGCCCATCCTCTACCACGAGAACTCGGCCTCGGAGAGCGGAGGCGCCGGTGCCAACGTGCCCGTGAGCCAGCCGCTGCTCACCTTCCCGCACCCGGGCGTCTACTACTCCCATCCAATCGTCACATCCGTGCCGCTGCTCAGACCGGTTTGAAAATAGCAGAGTCTTCGGCACAACTTGGTGTCGATTTCAAAATcatccgaaaaaaaaaaaaaaaaagacttactATTTTTGTAcaactgaatgaatgaagaaaaaaagagacacattGTCAGGCCCACATGgaactattttggcaaatataTTGTGTCATTTTCCATAAGGGTGCTGTTTACACGTGATCCGACAATTCAAATCccatgttttatattattattattactacaataaattattattattaatattattattattattagctgcCTATTATTTCTATAGGCCTATATAATTATCACCTCAGGAGTCCACCTGCTTACACTGCCTgatgtcttttatttttccaTAGTTTTTACACCATGACCAAACAACTGgtacacttttttattttattttttatttttttttaaccttgttTACAAAAATTGGCGGCCTAAAGGCGCGGGCGTTCTTATCATCTGACaaaattatttgattttatttaggCTACATTTCCAGAACTCATTACACTATGATGTGCAATACACTGACGGTGTGCTTTGAACTAATGACTCCACTAAACGGTAAAACATGTTTTGTCATCTATTCACGCAGGTATATTGATGAGGCTTTgttgtaatttttctttttgtttgctttttaaagCGCTTGACGGGGGACAATCAAGACACAGTCACCTGTAAAATACCCATGTAGCTTTATGTTTAGTTTTAGTGATTCTTACTCTTGTTCCCTCTACATGGACACGTCTTTCAAGCACAAGTGTGAGCTCCCAATGTCTCTTAGTCTACTTTGTGTTTTTGAACAGGAGCGGCAAAAATATCGACACTGCtgtgtaaaatatgtaaatgtatatatttaatgagGCACGGAGAGAGGAGCTGCCACTTCTTTGTACAGTAAAAACAAcgttttgatattgtattgctgAACTATGTTGTGAAATAAATGGATACTATTCCTTA

Function

NR:

description
PREDICTED: homeobox protein HMX3-A

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784029.1 True 2337 mRNA 0.46 4 13831553 13855767

Neighbor

gene id symbol gene type direction distance location
cuzd1.2 NA coding upstream 4256 13818639 ~ 13827297 (+)
cog2 cog2 coding upstream 21659 13800246 ~ 13809894 (+)
klf5a klf5 coding upstream 78876 13744573 ~ 13752677 (+)
pibf1 pibf1 coding upstream 87902 13721815 ~ 13743651 (+)
bora bora coding upstream 119562 13707961 ~ 13711991 (+)
hmx2 hmx2 coding downstream 5333 13861100 ~ 13863306 (+)
LOC120547617 LOC104928877,LOC103364007,LOC104955506,LOC102779318,LOC101473811 coding downstream 108533 13964300 ~ 13970572 (+)
abraxas2 fam175b coding downstream 234460 14090227 ~ 14106778 (+)
zranb1b LOC103364011,LOC100705114 coding downstream 251764 14107531 ~ 14130258 (+)
edrf1 edrf1 coding downstream 355410 14211177 ~ 14223939 (+)
G193661 NA non-coding upstream 76757 13752743 ~ 13754796 (+)
G193395 NA non-coding upstream 898699 12857800 ~ 12932854 (+)
G193393 NA non-coding upstream 987173 12844072 ~ 12844380 (+)
G193392 NA non-coding upstream 1064079 12767268 ~ 12767474 (+)
G193373 NA non-coding upstream 1365740 12465597 ~ 12465813 (+)
G193701 NA non-coding downstream 90306 13946073 ~ 13946351 (+)
G193709 NA non-coding downstream 116023 13971790 ~ 13972115 (+)
G193837 NA non-coding downstream 653832 14509599 ~ 14510920 (+)
G193847 NA non-coding downstream 835584 14691351 ~ 14692096 (+)
G193902 NA non-coding downstream 963083 14818850 ~ 14820963 (+)
chrm3a LOC101465548 other upstream 622343 13123018 ~ 13209210 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other upstream 1458282 12351323 ~ 12373271 (+)
sf3b5 sf3b5 other upstream 1541023 12287013 ~ 12290530 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other upstream 1553178 12246951 ~ 12278375 (+)
zbtb18 zbtb18,LOC102787611 other upstream 1940350 11856987 ~ 11891203 (+)
G193730 mettl10 other downstream 218875 14074642 ~ 14076457 (+)
zgc:91976 sgms1 other downstream 1354072 15209839 ~ 15233875 (+)
LOC120548468 NA other downstream 1939203 15794970 ~ 15803515 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other downstream 2056995 15912762 ~ 16129667 (+)
G194185 NA other downstream 2497424 16353191 ~ 16353831 (+)

Expression


Co-expression Network