hmx2 (hmx2)


Basic Information

Item Value
gene id hmx2
gene name hmx2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 13861100 ~ 13863306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784030.1
CCAGGAATACACTCATGTTCCCCGAGCTCTAGAAAAAACACCTACAACTCCTTCAATGTTAAAACTCCACAATTAAACCCGgataggacaaaaaaaaaaaaaagaagaagacaaaagCCGCATTCGTAATTTTACGCACCAATCGTATAGAAACCAATAACGGAATACAAGGGGACAGACAGATTCAGGGAATACTTCAATACTGTTATGAAGCGAGAATGAGTAGCGCAGAAGACAGCGGGAGCAAGTGCTCGTCGGGCCCGATTTCCAGCTTTACCATCCAGTCTATTTTGGGCACACCGTCCGATGCGCCGCGCTCCGGGAACAAGGAGCTCTCCAAGGGGCCGCCGCCGCCGCGGAGGCGCTCACTGTCGGTGTCCTCCGAGGAGGAGTGCAGCGGCGGGGAGGACTCAGCAGACTGCTTCTGCTCCGACACGGGTCACAGCGAGCCATGCAACCAGCACCAAGCCCGTAACTTCTGTTTAGGTCCCGCTAAAGGACTTCTATCTGGGAATGACGGGCTCGCGCGGCGGCCGCACCTGCCACAGCCTATGCTGCAGGATTAtaaggaggagcaggagagacCGTGCCATCAAATGTCACCTCTGTctgaggagagacagacagacggtgCGGACAAGCAGGGCAACTCAGCCAAGAAGAAGACGCGCACGGTTTTCTCCCGGAGTCAGGTGTACCAGCTGGAGTCCACCTTCGACATGAAGCGGTACCTGAGCAGCTCGGAGCGGGCCTGCTTAGCCTCCAGCCTGCAGCTGACGGAGACTCAGGTCAAGACGTGGTTTCAGAACAGGAGGAACAAATGGAAACGGCAGCTATCAGCTGAACTGGAGGCGGCCAACATGGCCCACGCCTCCGCACAGACACTAGTGGGGATGCCGCTGGTTTTCAGAGATAACTCCTTACTGCGTGTTCCGGTTCCCCGGTCTATCGCCTTTCCAACGCCCCTTTATTACCCGGGGAGCAACCTGCCAGCGTTACCTTTATACAACCTGTATAACAAGATTGAGTACTGATTGACTCTGCTGTATGTCCACGTAAAAAACGCATTACAAAACAGTACAACATTCTTACAAGTGTCTCCACATAACCCCTGTATATTAATTGTATCATTTTATTTGTTGAGGACATTTTTATTATGCAGCAACTGTACGTCTCACATGAAAGCAATCAAGCTTCCCTAAATGTATAAAATACACCATGTGTATAATTAATATCAAtcatttttgtacttttattttctctctccccctttaaCTGATAACATAATGGAGTATAATATTCATATCGCATTCAAGAAAAAAATGGattccacaaaaaaaatgtgttaacaCAGTTTTTAATTCATAATTGGTTCCTCACACATACTGCAAAGCAGCAGTCATTTTATTTCACCTGTCAGGAAAAACAATTATTCCATTTAAGGAAAAACATCATTGTTTCTATTGTGATTTAGACCTTCAATAATAGCCTTCTCATTCAATAAATTTTCTATTTCAGTGAAAA

Function

symbol description
hmx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear morphogenesis and posterior lateral line development. Predicted to be active in nucleus. Is expressed in nervous system and otic vesicle. Orthologous to human HMX2 (H6 family homeobox 2).

NR:

description
PREDICTED: homeobox protein HMX2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784030.1 True 1524 mRNA 0.47 2 13861100 13863306

Neighbor

gene id symbol gene type direction distance location
hmx3a LOC100699350,LOC103364005,LOC102290348,LOC101473229,LOC102196513 coding upstream 5333 13831553 ~ 13855767 (+)
cuzd1.2 NA coding upstream 33803 13818639 ~ 13827297 (+)
cog2 cog2 coding upstream 51206 13800246 ~ 13809894 (+)
klf5a klf5 coding upstream 108423 13744573 ~ 13752677 (+)
pibf1 pibf1 coding upstream 117449 13721815 ~ 13743651 (+)
LOC120547617 LOC104928877,LOC103364007,LOC104955506,LOC102779318,LOC101473811 coding downstream 100994 13964300 ~ 13970572 (+)
abraxas2 fam175b coding downstream 226921 14090227 ~ 14106778 (+)
zranb1b LOC103364011,LOC100705114 coding downstream 244225 14107531 ~ 14130258 (+)
edrf1 edrf1 coding downstream 347871 14211177 ~ 14223939 (+)
LOC120548387 ptpre,LOC103357678,LOC104929420 coding downstream 622824 14486130 ~ 14509420 (+)
G193661 NA non-coding upstream 106304 13752743 ~ 13754796 (+)
G193395 NA non-coding upstream 928246 12857800 ~ 12932854 (+)
G193393 NA non-coding upstream 1016720 12844072 ~ 12844380 (+)
G193392 NA non-coding upstream 1093626 12767268 ~ 12767474 (+)
G193373 NA non-coding upstream 1395287 12465597 ~ 12465813 (+)
G193701 NA non-coding downstream 82767 13946073 ~ 13946351 (+)
G193709 NA non-coding downstream 108484 13971790 ~ 13972115 (+)
G193837 NA non-coding downstream 646293 14509599 ~ 14510920 (+)
G193847 NA non-coding downstream 828045 14691351 ~ 14692096 (+)
G193902 NA non-coding downstream 955544 14818850 ~ 14820963 (+)
chrm3a LOC101465548 other upstream 651890 13123018 ~ 13209210 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other upstream 1487829 12351323 ~ 12373271 (+)
sf3b5 sf3b5 other upstream 1570570 12287013 ~ 12290530 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other upstream 1582725 12246951 ~ 12278375 (+)
zbtb18 zbtb18,LOC102787611 other upstream 1969897 11856987 ~ 11891203 (+)
G193730 mettl10 other downstream 211336 14074642 ~ 14076457 (+)
zgc:91976 sgms1 other downstream 1346533 15209839 ~ 15233875 (+)
LOC120548468 NA other downstream 1931664 15794970 ~ 15803515 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other downstream 2049456 15912762 ~ 16129667 (+)
G194185 NA other downstream 2489885 16353191 ~ 16353831 (+)

Expression


Co-expression Network