LOC120548093 (perp)


Basic Information

Item Value
gene id LOC120548093
gene name perp
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11681816 ~ 11693240 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784095.1
CCAGCCCTTAGGTCCCAAAACAGGTTGCATGACACACACTCGGGTGGGGCATTTTTATCTAGTTCCACACCTCATCTACTGACACTCTTTCCGCAAAGACGCACAGGATACTAGGCTATATAATCGAACGGACTACACCGCTACACTAGTGTTTCGCCCCACAGCTCGTCCTTCTCTCTAACCCGCTCCACACACTCCGATCGTCGGTCATGTTTCGCTGTGGGATCGCCTACCCCCGATGCAGGTGGATCGtgcccctgctgctgctcttcgcCATTATTTTTGACATCATCGCCATCGCCGCTACCTCGGGATGGGTCGAGGATGAGAACGCCAAGTCTCACTACGCCAGTATGTGGCAACAGTGCCGAGGCAGGAATGACAACTGGGACTGCAAGTCGCTCATGGAGTTCTCTTGGGCCCAGGCAGTCGCTGCTCTGATGATCATCGccctcatcatcctcatcatcgcCTTCATCATCTCCTGTGTGGCTTTGTGCTGCACATTAAACATCACTCTTCTGCCCCTAATAGGAGCACTGTTGATCATTGTTGTGGTTCTCCAAGTCATCGCTCTGATCATCTACCCCTGCAAATTTAATGAGTTGATCTTCGAGGGCCACTATTACTACACCTGGGCCTATGGCTTCGGCTGGGGCGCCACCATCCTCTGCATCGGCTGTGCCATCCTCTTCTGCTGCCTGCCACGCTACGAGGATGAGCTGAGCGGCCTGGCTAAGACCAAATACATCTATTCCTCTGCTTAAAAACTAAACCTGTACAACCACCCAATTACAGATATTTTCACTTTCCACTCTGAGCTGGAACTGTGCTGGCCATGGAACATTTGTAGACAGTTTTACACCATTTCACCAAAGATCCATGATATCTCAATTCAGTTAGATTTAGTTTGGCATTGGGAAAACTGTCCTCTAACATCCAAGAGTGAAGCCAGAAGCAAGGGGTGATTGTTACTGGAAGTGGACTGTGATTGGATGCTCCATCTGCTTTAATGTACAGACTTCTGTTTTAGATTAAGTCAGCATCATACAAAATAGTTTTTACCATTCTGTTTTTTCACATTCCGCATTTGAGTGAGATGTATTCCTCATTTTATCTGTACTTTTTACCTGTAATTCTCAATGCAATATCACCAAAGTGCACTTAACCTAAGGGATGTAATTATGTGTAAAGCGTAGATTTCCTAAAACCTTGGTAAAAGAGCAGTTTAGACTAAAAATTGCACAGGATGCAAAAGGAATCATTAATCATCATTTGCTTTTTTCCCAAgtgttataattattttttcttatttctttaatgtgtgtgttttattctgTATGTGGTATGAAAGAAGCAAAGGCTTGGAGTCAGAAGCTGAATGTAATCTATACATATGGAAATTTAGTTTAAAAGTCGTTttagtaccttttttttttatgcatctatttttttttttttttttataattctgaTCTGCTTTTTATCTCCAgagtttttttattcttatttactTATTACCAAAGGGGTATAACTGTGGGAGTTTGCTGTGCTGTCTTTGTATCTGTTCTGAAcactaataatactaatacaCTCGATGAGCAGACACAGTGTGTGATGGTTGATtcagtcatttttttctttgtcacacTAAACTGGAAGCAAATTTATATTCATTTCCATTGAGCTTGATCATTAATCTGTCTCGTGCAAATTTAGAAAAAGtttaaaacagtttttaatgtctTGTTCCCTCAAAGTAGGTAGTGCATTCAGAGAGAAGCCTTTCCTTAAAATAGGTTTTTAGTAACAAATAGATGACCAATCATGTATTTCCTAAAGGCCTTCATAAGTCTTGATAATGCTTCTTTGGCTAACCCATCTGCCGGTATGATGAGAACTGAGACCAAGGTGTACAATCTTCTGACATACTTTGTGTAAAACTTGTGCCTTAGCTTCTTCAGTGTTGTGTTGTTGAATGTCCAATCAAACTGCTCAGTCTGGTTTTACTTACTCACGCTTGATCCCAGTCAACAGCAACATTTCTGTTCATGCCAAGGCCAAATGCATGCCCAAACAAGACTAAGCTATATTGTTATATTACATGAAAGAGTTCTGAGGAAAGATCATTTGACTGTTGAATGAAAAAAGAGAAGTGATAAATGATCTTAGAGAAGTAAGTAAAACTCATCCCATGCTTTTATCATCTTAGAGTCTTTAAAGTTATTTACGCAGCAAATTACTGCATAAATAACTTTATGAATTGGTGGAAGTTTGAACTGAGAATCTGGAGAGATTCAGGCAGATTTATACTGTCTGTATGTCTCAAAGGTGAGGTGAAAATGAGCATGAATTTCTCAACACCAGCTTTTTCAGATATTATTAGTCACTGTATGGGTATATTATGTACTACAGAGAATGTTCTATTAACATCCATCGACTTCTGGAAATCACCCAGCTGTTCTGCTGTAGTATGAATTgattattttggtagtctgtatttttatgcaataaaaatcttttttcaaa

Function

symbol description
perp Acts upstream of or within apoptotic process involved in blood vessel morphogenesis; regulation of apoptotic process; and response to UV. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in several structures, including EVL; axial chorda mesoderm; digestive system; epidermis; and nervous system. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to human PERP (p53 apoptosis effector related to PMP22).

NR:

description
PREDICTED: p53 apoptosis effector related to PMP-22

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10136 PERP; TP53 apoptosis effector

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784095.1 True 2529 mRNA 0.40 3 11681816 11693240

Neighbor

gene id symbol gene type direction distance location
LOC120547549 tmem26 coding upstream 2705 11669373 ~ 11679111 (+)
hint1 hint1,LOC102782004 coding upstream 152589 11527317 ~ 11529227 (+)
abcg5 abcg5 coding upstream 162897 11508095 ~ 11518919 (+)
lrpprc lrpprc,LOC102780371 coding upstream 189498 11434600 ~ 11492318 (+)
znhit2 NA coding upstream 247820 11431298 ~ 11433996 (+)
tnfaip3 tnfaip3 coding downstream 4366 11697606 ~ 11710406 (+)
LOC120547506 NA coding downstream 230854 11924094 ~ 11927433 (+)
LOC120548087 LOC103370708 coding downstream 243085 11936325 ~ 11985948 (+)
ifngr1l NA coding downstream 391510 12084750 ~ 12104791 (+)
il22ra2 NA coding downstream 414196 12107436 ~ 12113315 (+)
G193047 NA non-coding upstream 262714 11394094 ~ 11419102 (+)
G193041 NA non-coding upstream 295491 11383093 ~ 11386325 (+)
G192995 NA non-coding upstream 531608 11146804 ~ 11150208 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding upstream 542450 11135080 ~ 11139366 (+)
G192945 NA non-coding upstream 662885 11018140 ~ 11018931 (+)
G193161 NA non-coding downstream 21976 11715216 ~ 11715850 (+)
G193172 LOC107099926,LOC104931217,LOC103370571 non-coding downstream 93173 11786413 ~ 11791957 (+)
G193213 NA non-coding downstream 294034 11987274 ~ 11991708 (+)
LOC120548033 NA non-coding downstream 314395 12007635 ~ 12017653 (+)
G193295 NA non-coding downstream 484345 12177585 ~ 12178477 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other upstream 97644 11574398 ~ 11584172 (+)
prepl prepl,slc3a1 other upstream 313193 11357040 ~ 11368623 (+)
G192994 NA other upstream 529575 11150319 ~ 11152241 (+)
LOC120548129 LOC107375852 other upstream 725194 10953053 ~ 10956622 (+)
mrpl57 mrpl57 other upstream 1090523 10586778 ~ 10591293 (+)
sdccag8 sdccag8 other downstream 24653 11717893 ~ 11790539 (+)
zbtb18 zbtb18,LOC102787611 other downstream 163747 11856987 ~ 11891203 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other downstream 553711 12246951 ~ 12278375 (+)
sf3b5 sf3b5 other downstream 593773 12287013 ~ 12290530 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other downstream 658083 12351323 ~ 12373271 (+)

Expression


Co-expression Network