LOC120548133 (actr2,LOC104930021,LOC108423375,LOC105008543)


Basic Information

Item Value
gene id LOC120548133
gene name actr2,LOC104930021,LOC108423375,LOC105008543
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8930547 ~ 8948105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784166.1
AGCACCCTACCCTTCCTCCTCTCGCCGGGTTGGTGTGTGTCTTCCTTCCGGCTTGCCGAAGAAAGTTGAGGGAGGTTCAGCGGCAACTGGGCTTTAACATAATGGACAGCCAGGGAAGGAAAGTGGTAGTCTGTGATAATGGGACTGGGttTGTCAAGTGCGGCTATGCAGGCTCCAACTTCCCAGAGCACATCTTCCCTGCGCTTGTTGGGAGGCCCATTATTCGCTCGACAGCCAAAGTCGGAAACATTGAGATCAAGGACTTGATGGTGGGGGACGAGGCCAGCGAGCTGCGCTCCATGCTGGAGGTCAACTACCCCATGGAGAACGGCATCGTCAGGAACTGGGATGACATGAAGCACCTGTGGGACTACACCTTCGGCCCAGAGAAGCTCAACATCGACTCCCGCAACTGCAAGATCTTGTTGACCGAACCACCCATGAACCCCACCAAGAACCGCGAAAAAATCATTGAAGTGATGTTTGAGACCTACCAGTTTTCAGGAGTCTACATTGCCATACAAGCTGTGCTGACGCTGTATGCCCAAGgcCTTCTGACCGGTGTGGTGGTGGACTCGGGTGATGGTGTGACACACATCTGTCCAGTGTATGAGGGCTTCAGCCTGCCTCACCTGACAAGACGCCTGGACATCGCAGGCAGGGACATCACCCGCTATCTCATCAAGttgttgttgttgagggGTTATGCCTTCAACCACTCTGCAGACTTTGAGACGGTGCGTATGATGAAGGAGAAGCTGTGCTACGTGGGCTACAACATCGAGCAGGAGCAGAAGCTGGCCCTGGAGACCACCGTGCTGGTGGAATCGTACACTCTGCCAGATGGTCGTGTGATCAAGGTGGGAGGAGAGCGGTTTGAGGCCCCCGAGGCTCTGTTCCAGCCCCACCTCATCAACGTGGAGGGTGTCGGAGTGGCGGAGCTCCTCTTCAACACCATCCAGGCAGCCGATATAGACACCAGGTCCGAGTTCTACAAACACATCGTGTTATCAGGAGGATCCACTATGTACCCGGGCCTGCCCTCTCGGCTGGAGAGGGAACTCAAGCAGCTGTACCTGGAACGTGTGCTCAAGGGAGACGTGGACAAGCTTTCGAAATTTAAGATCCGGATCGAGGATCCTCCCAGGCGAAAGCACATGGTGTTCCTGGGCGGAGCCGTGCTGGCCGACATCATGAAGGACAAGGACAACTTCTGGCTGACCCGCGAGGAGTACCAGGAGAAAGGAGTCCACGTGCTGGAAAAACTCGGAGTCACCGTCAGATAAAGCACTGGACggacagacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgacatacacacacacacacgacatacacgcatccccctcccccccctcgcCCACATCGCAGAGTATATATCTATTTatccctcttcttctctctttcggCTCTTGATACTACTCAAACATCAGAGGGAGTCAGGCcgtcacctcctcctcctcctcctcctcctcctcctctctctctctcctctgcctttCTTCTCTCCTGGTTTGGAATTGGCTCACGCTTTTCCTCGCAAGCCCACGAGAACCAATTCCATCTTTGCAGATTTTACACTGAAAACCCACCTTTACTTAAACCATGAATCGAAGAGGTTAATGTTGCCCTTCTGGTGTATTTTTGAATCCGATTTTCACTGAAGGTTAAACCCAGGGTGGGAAATGTTAATAACTCTGCTTGTTAACCTCCAAATAGGTTTGTTGTGAGTTATACTTGGCGGGTTAACCCACCAGCCGCTGCAGTGAGTGTTTTTAGGAAGTTGAGTTTCCTCCCTTGATTAAACCTCCCGGAAGGGGATAAATTGATGCAAAGCTTCTGTAAATCTGTAATATCACAATCAGGGTCCACCACAAACAGCCACGGGCCGCTTTCAGCATCTGTTCCAGGTGAGCGAGAACTGATCACATTTTTATGTCggttttttataaaataatatcatgactttttcttttctgggagagggatttctttttattgtgctgttcctttttttttttttgttggagttcaatttattcttttatttttctttttcattgacattttcttttgttgctGTGCACTACTACCATTGTAAATGGAGTGTATTGTGGTAACCGAAGTTGctccatgttttatttttttttttgaagaatcGATggttgatttataaagggaCAAATACACAAAGGAAAGCCCCTGAGCTTGACATCGGGTGTGTGACGGTACTTCGGAGTTTGTGGGCGGTGACACGATGATGGGAtgttgggggggagggggggcggaGTGGGAGTGATGCTATTTGTTCCTCATCAGACAGCCTCGCCTctgcctcctctctctgtgtaaATCTCAAGCTGAATAAACGGGTGTGAGCAGTTGTAGCAATATTACAAACTGTGACGACAACCTAGCACCTTACCCGTCGTATTCCTTCAGATCCACCACAGCACGGAGGCAGTCGCGGGTTGGCGATGAGATCGATTTGAATCTGGGCGCAGAGCACCGCAAAAGTGGGACAAAATAAAACGGTATTTTATCGACGTTGAAATACTGTTGAGACCGTATTTAAGTTCTCCAGTCTTTGGCCCCCCAACGGTTGACTTAATGATTACTGGAGGCACTTCTACTTTTGAgtatgaaaaatgtttttttttttttttttttcttcctctttccatGAACGTCTATCCAGTGCCAAGTGCAGTTAATGTTAACTGGATCTCATGAGTTAATGTCTTtcttttgtcactgtttttgttttttattttcctgtgtTGTTCATAGCATAACTGCCTAACGCtgatttaaataaagaaaagtgATTTATAAGGA

Function

symbol description
actr2 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in positive regulation of cellular component biogenesis and positive regulation of nucleobase-containing compound metabolic process. Acts upstream of or within cilium assembly. Located in cytoplasm; nucleus; and site of double-strand break. Part of Arp2/3 protein complex. Biomarker of colorectal carcinoma.

NR:

description
PREDICTED: actin-related protein 2-A

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K17260 ACTR2, ARP2; actin-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784166.1 True 2894 mRNA 0.49 9 8930547 8948105

Neighbor

gene id symbol gene type direction distance location
aftphb NA coding upstream 3057 8917425 ~ 8927490 (+)
LOC120547907 lgalsl,LOC104930018,LOC102203068 coding upstream 14851 8893346 ~ 8915696 (+)
LOC120547906 NA coding upstream 18215 8909665 ~ 8912332 (+)
ugp2b LOC103372870,LOC102201608,LOC102306689 coding upstream 134955 8750738 ~ 8795592 (+)
mdh1ab LOC103372869,LOC100711978,LOC106913728,LOC102307187 coding upstream 181637 8743007 ~ 8748910 (+)
LOC120548362 NA coding downstream 379269 9327374 ~ 9333998 (+)
LOC120547702 LOC101470025,LOC103386883 coding downstream 473239 9421344 ~ 9437910 (+)
pno1 pno1 coding downstream 494771 9442876 ~ 9447476 (+)
LOC120548339 NA coding downstream 799203 9747308 ~ 9754782 (+)
mrps5 mrps5 coding downstream 1149627 10097732 ~ 10123497 (+)
G192530 NA non-coding upstream 25670 8857991 ~ 8904877 (+)
G192464 NA non-coding upstream 552848 8369378 ~ 8377699 (+)
LOC120548141 NA non-coding upstream 801184 8126718 ~ 8129363 (+)
G192413 NA non-coding upstream 804554 8124918 ~ 8125993 (+)
G192412 NA non-coding upstream 855588 8073781 ~ 8074959 (+)
LOC120548135 NA non-coding downstream 29099 8977204 ~ 9058418 (+)
G192633 NA non-coding downstream 449443 9397548 ~ 9419324 (+)
G192634 NA non-coding downstream 456297 9404402 ~ 9449821 (+)
G192667 NA non-coding downstream 539658 9487763 ~ 9491128 (+)
G192691 LOC104930997,LOC101166076,LOC103372934,LOC102208791 non-coding downstream 686660 9634765 ~ 9638011 (+)
bean1 bean1,LOC102779979 other upstream 811484 8066336 ~ 8119063 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 2125995 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 2141461 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 2424696 6485581 ~ 6505851 (+)
itsn1 itsn1 other upstream 2569556 6324515 ~ 6360991 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 166551 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 548686 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 658420 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 705799 9653904 ~ 9673252 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 1244924 10193029 ~ 10219271 (+)

Expression


Co-expression Network