mrps5 (mrps5)


Basic Information

Item Value
gene id mrps5
gene name mrps5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10097732 ~ 10123497 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784228.1
ctatttttcaacAGGCATAGTTCAGGCGCCTTGTTGTCCGTTGAAGGACCCTTCATAATTCCAACATGGCGGCGTCCATACGTGTGTGCTGTGCCCTCCGCATCACAATCGGAGgtGCAGCACCACTCCGTACTTTAGGGGGAGTAGTTCAGGTGTCCCACTTGGCAAGTCGAGCTTCAGCTGCCTCTCTCCAAAGAACCCCTGCACTTCCACTGTTCCCTGCAACAGCATGGCAGCAAACCAGACATGGCAGCTTCTTCAACAAGTtgacGGCTGAGGAGTTGTGGAGAGGTGTGTTGGCAGAGTCAGGTGCCGGAGCCAGGAAGGGCAGAGGGAAGAGAACTAAACGCAAAGTTAAGAGAGACCTGAACCGAGGCCAGAACATCGGAGAAGGTCGTGGTGGTTTTCTGTGGCCTGGTCTGAACGCTCCAGTCCTGAAGGATGGGAATCTGCAGAGCATGAGTCGAAGAGGCGAGAGTGAGCAGCAGGAGGTGCAAGCTGAACTAGTGCGTCAGAGGGATGAGTGGgacaggaagaggaagatgaagGTGAAGAGGGAAAGAGGATGGACAGGAAACTCTTGGGGGGGCATCAGCCTGGGCCCCCCTGACCCTGGCCCCAACGGAGAAACCTATGAGGACTTTGATTCTCGTGTTATTGAGGTGAAGAGTGtgttcaacatgacggccaagGAGGGCAGGAAGAGGTCCATCAGCTGCCTGGTCGCCGTGGGAAACGGCAACGGAGCCGCAGGCTTTGCGTTAGGGAAAGCAGCAGACAGAAACACCGCTCTGAGGAAGGCCAAGAACAGAGCGATCCACTACTTGTACTATATAGAACGATACAACAACCAGACCATTTATCATGACATTCAGTCTAAGTTCAAAAGGACGACGCTCCGCATGAAGAAACAGAACGAAGGTCATGGTCTGCACTGCCACCGGGCGGTCATCACCCTGTGCAAGCTGATTGGCATAAAGGACTTGTACTGCAAAGTAGAAGGATCTGTCAATCTCCTCAACATCACCAGGGCCCTCTTTACTGGATTAGCCAATCAGGAAATTCACCAGAAATTGGCCGACAAGAAGCAGCTCCACGTCGTCGAGTTTCAGTCGCAGCGAGGCCCGCTGCCCATGGTGGTGGCGAGTCCGAAAGACGGGGCACGACCCGACCCGGAGCCTGAAGACGAGATCCCCAACACCCGGCTGCACTGGGACGACGTACGGGCCGCGCAAGGAATCAAACGCTCGATCTGGGCGGGTGTCAAACGCACTATCTGGTAGAGTGGGAGTACGCAGATGACTCACAAGACAGATATATAGGACTGATGGGGCCTGGGATTGTCAGATGGCGGTCTGATTTTTGGTTTTGCcaagaaaaactgaaaattaagattaagaagaagaagaatttgTTCAAGCagaatatcagtttttttttataatctccAAATCTAGtggattgtgattgttttgtcaACCGAGGACTAAAGTTACATGTTTCTCCAACTGAAGACATCTCATTTGAAAACCTAATTCTCCAGAGTCACCCAGTAAAGGCCAATAGTGACAAATATTAATGGCCAAGATGTCATTTTCTTTATAACTGTAAAAGGAAATCTTCTACTTCCTCATCCACGTGGAAGTGTTGTAAAATGTACTAACGTAATAAAGTACGGAACTGTAaaca

Function

symbol description
mrps5 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS5 (mitochondrial ribosomal protein S5).

NR:

description
28S ribosomal protein S5, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02988 RP-S5, MRPS5, rpsE; small subunit ribosomal protein S5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784228.1 True 1689 mRNA 0.50 12 10097732 10123497

Neighbor

gene id symbol gene type direction distance location
LOC120548339 NA coding upstream 342950 9747308 ~ 9754782 (+)
pno1 pno1 coding upstream 650256 9442876 ~ 9447476 (+)
LOC120547702 LOC101470025,LOC103386883 coding upstream 659822 9421344 ~ 9437910 (+)
LOC120548362 NA coding upstream 763734 9327374 ~ 9333998 (+)
LOC120548133 actr2,LOC104930021,LOC108423375,LOC105008543 coding upstream 1149627 8930547 ~ 8948105 (+)
zgc:65997 LOC101480976,LOC102212345,LOC100706081,LOC104967569,LOC107089893,LOC105937212 coding downstream 59599 10183096 ~ 10187447 (+)
LOC120547607 NA coding downstream 98063 10221560 ~ 10236944 (+)
LOC120547519 vip coding downstream 404703 10528200 ~ 10534574 (+)
mtrf1l mtrf1l,LOC106904956,LOC103137471 coding downstream 427995 10551492 ~ 10557691 (+)
desi2 desi2,LOC101155051,LOC107089908 coding downstream 435064 10558561 ~ 10579945 (+)
G192746 NA non-coding upstream 66772 10030716 ~ 10030960 (+)
G192744 NA non-coding upstream 87220 10010287 ~ 10010512 (+)
G192736 slc8a1,LOC106939074 non-coding upstream 196806 9900128 ~ 9900926 (+)
G192735 NA non-coding upstream 201607 9895896 ~ 9896125 (+)
G192734 NA non-coding upstream 294081 9803295 ~ 9803651 (+)
G192751 NA non-coding downstream 275 10123772 ~ 10124271 (+)
G192755 NA non-coding downstream 9039 10132536 ~ 10133232 (+)
G192772 NA non-coding downstream 104623 10228120 ~ 10228663 (+)
G192773 NA non-coding downstream 105965 10229462 ~ 10229898 (+)
G192771 NA non-coding downstream 113474 10236971 ~ 10238659 (+)
arhgef33 arhgef33,LOC107098984 other upstream 424480 9653904 ~ 9673252 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other upstream 473168 9606525 ~ 9624564 (+)
kcnq5a LOC101074332,LOC101486129 other upstream 494850 9496791 ~ 9602882 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other upstream 902316 9114656 ~ 9195416 (+)
bean1 bean1,LOC102779979 other upstream 1978669 8066336 ~ 8119063 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 69532 10193029 ~ 10219271 (+)
LOC120547507 NA other downstream 140600 10264097 ~ 10292289 (+)
LOC120547509 NA other downstream 191449 10314946 ~ 10323760 (+)
G192834 NA other downstream 318030 10441527 ~ 10442085 (+)
mrpl57 mrpl57 other downstream 463281 10586778 ~ 10591293 (+)

Expression


Co-expression Network