supt3h (supt3h)


Basic Information

Item Value
gene id supt3h
gene name supt3h
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6842493 ~ 6860186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784230.1
CGCGCTTCGTAAATTCGATTTACGTCATCAAGTCGCGCCGAAAATTAATTAAATCGAAAACCGTCGACAGACGCAGCACCAACGCTTTCTTGAACGATTTTGGTGGCTGTGGTTATGAGCAGTCCCATGGCTGGCTCAGCAGCCTCCAGTTCTAAAGACCGTCCAGCTTCCAGGACCAATTTCATCCCAGAGCTACAAAGCATgatGTTTGCTCTGGGAGACGCCCGCAGGCCTCTGCACGAGACTGCAGCTCTGGTGGAGGATATTGTGCACACGCAGCTCATTACTATGCTGCACCAGGCCTGCGAGGGTGCGTTTCTTCGAGGGTCGAGGGTCATTTCACCGGAGGACATCCTGTTCCTGATGAGGAGGGACAAGAGGAAGGTGGCTAGATTGTTAAAATATCTCCAGTTTAGAGATTATAAATCCAAACTACTCAAAACTGTGGAGGATGAAGAAATGCTGCAAGAAACGGacaAATCGGGTGTTGCCGGCGGTACCCAGCGGAGGCAGCGATTGGCTCAGGATTTTCTGGTGTGGATGGATCAGACTGGCGAGCTCCTGTCGTTGGCTGAGCGACACGAAGTAGATCCAGTCAAACAGGAGCGGATGGAGCGTTTGGAGCGTCAGACTCGAACTATGGACCAGACTCAGTACTCTGAGTTCTGTGAGAGTAGACAGCTCAGCTTTGctAAGAAGGCGTCAAAGTTTCGGGACTGGCTGGACTGCAGCACTTTAGAGCTGAAACCCAACAGcatctccatggagatcttgtCATACCTGGCCTATGAGACCGTTGCCCAGATTGTGGATTTGTCTCTGTTGGTAAAGCAAGAAATGACCGCGAAAACAAATCCCGTCGGCCGTGTTATCTCTGCCAGCTACAtccactacaacacacacactgagGTAAAGAAGGATCCAGACTCACCTGAAGCCACTCCCCCTTCCACGCCTAGCTCCTCCCACTCATCCAAATCCCTCCCACAGGGTAACGGCAGCCTGGACTGCCGAGGCAGACAGAGGAAACGCAAAAAGAGTTGTCCGGCTACAGTGGAACCTCCCAGTGGAGCCATCCAGCCCTGTCACATCAGAGAGGCTATTAGAAGATACAACTACAGACACACAAGTGCTTATTGGAGAAGTGGGATGGCCTTCCTCGCCTGCTGAAGATGCAACCCATTCTTCTTATGTACGTGCACGaataatttccttttttgttcCATTGTTGTAATAAAGACTTTTCAGTAA
>XM_039784231.1
TCTGGGAGACGCCCGCAGGCCTCTGCACGAGACTGCAGCTCTGGTGGAGGATATTGTGCACACGCAGCTCATTACTATGGTAACGCAAATACAGTACACCTGCACCAGGCCTGCGAGGGTGCGTTTCTTCGAGGGTCGAGGGTCATTTCACCGGAGGACATCCTGTTCCTGATGAGGAGGGACAAGAGGAAGGTGGCTAGATTGTTAAAATATCTCCAGTTTAGAGATTATAAATCCAAACTACTCAAAACTGTGGAGGATGAAGAAATGCTGCAAGAAACGGacaAATCGGGTGTTGCCGGCGGTACCCAGCGGAGGCAGCGATTGGCTCAGGATTTTCTGGTGTGGATGGATCAGACTGGCGAGCTCCTGTCGTTGGCTGAGCGACACGAAGTAGATCCAGTCAAACAGGAGCGGATGGAGCGTTTGGAGCGTCAGACTCGAACTATGGACCAGACTCAGTACTCTGAGTTCTGTGAGAGTAGACAGCTCAGCTTTGctAAGAAGGCGTCAAAGTTTCGGGACTGGCTGGACTGCAGCACTTTAGAGCTGAAACCCAACAGcatctccatggagatcttgtCATACCTGGCCTATGAGACCGTTGCCCAGATTGTGGATTTGTCTCTGTTGGTAAAGCAAGAAATGACCGCGAAAACAAATCCCGTCGGCCGTGTTATCTCTGCCAGCTACAtccactacaacacacacactgagGTAAAGAAGGATCCAGACTCACCTGAAGCCACTCCCCCTTCCACGCCTAGCTCCTCCCACTCATCCAAATCCCTCCCACAGGGTAACGGCAGCCTGGACTGCCGAGGCAGACAGAGGAAACGCAAAAAGAGTTGTCCGGCTACAGTGGAACCTCCCAGTGGAGCCATCCAGCCCTGTCACATCAGAGAGGCTATTAGAAGATACAACTACAGACACACAAGTGCTTATTGGAGAAGTGGGATGGCCTTCCTCGCCTGCTGAAGATGCAACCCATTCTTCTTATGTACGTGCACGaataatttccttttttgttcCATTGTTGTAATAAAGACTTTTCAGTAA

Function

symbol description
supt3h Predicted to enable transcription coactivator activity. Predicted to be involved in histone H3 acetylation. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be part of STAGA complex. Orthologous to human SUPT3H (SPT3 homolog, SAGA and STAGA complex component).

NR:

description
PREDICTED: transcription initiation protein SPT3 homolog

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11313 SUPT3H, SPT3; transcription initiation protein SPT3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784230.1 True 1251 mRNA 0.51 12 6842493 6860186
XM_039784231.1 False 1059 mRNA 0.51 10 6849195 6860186

Neighbor

gene id symbol gene type direction distance location
LOC120547615 LOC102195517,LOC102294040,LOC101480586,LOC100690426,LOC101068904 coding upstream 4503 6829571 ~ 6837990 (+)
LOC120548221 NA coding upstream 170469 6596041 ~ 6672024 (+)
LOC120547793 LOC108247470,LOC106529920,LOC107096283,LOC102227626 coding upstream 258755 6553886 ~ 6583738 (+)
plekha3 plekha3,LOC102799655,LOC103387813 coding upstream 375265 6447144 ~ 6467228 (+)
pdxkb LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 coding upstream 411363 6401031 ~ 6431130 (+)
cdh11 cdh11 coding downstream 833402 7693588 ~ 7790218 (+)
chrna1 chrna1,LOC103363491,LOC446087 coding downstream 1027802 7887988 ~ 7905745 (+)
LOC120547970 NA coding downstream 1072939 7933125 ~ 7938496 (+)
LOC120547971 LOC102778848,LOC102194630,LOC102290574,LOC101476901,LOC100711709 coding downstream 1082523 7942709 ~ 7947821 (+)
trnaq-cug_15 NA coding downstream 1090931 7951117 ~ 7951188 (+)
G192252 NA non-coding upstream 154918 6687332 ~ 6687575 (+)
G192244 NA non-coding upstream 166510 6674615 ~ 6675983 (+)
G192245 NA non-coding upstream 174783 6667384 ~ 6667710 (+)
G192214 NA non-coding upstream 332051 6509724 ~ 6510442 (+)
G192212 NA non-coding upstream 335057 6506321 ~ 6507436 (+)
G192283 cdc5l,LOC101487762 non-coding downstream 140 6860326 ~ 6862811 (+)
G192329 LOC108281047 non-coding downstream 262014 7122200 ~ 7123178 (+)
G192333 NA non-coding downstream 268666 7128852 ~ 7219024 (+)
G192359 NA non-coding downstream 975237 7835423 ~ 7835707 (+)
G192375 NA non-coding downstream 1046384 7906570 ~ 7906940 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 37941 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 53407 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 336642 6485581 ~ 6505851 (+)
si:dkey-22n8.3 LOC103376236 other upstream 445594 6020122 ~ 6396899 (+)
bean1 bean1,LOC102779979 other downstream 1206150 8066336 ~ 8119063 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 2254470 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 2636605 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 2746339 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 2793718 9653904 ~ 9673252 (+)

Expression


Co-expression Network