LOC120548221


Basic Information

Item Value
gene id LOC120548221
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6596041 ~ 6672024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784314.1
CCTAGTGGgaggcttttctttttttttttgaaaagaagagaagaattaaaaaaaaaacacatttagacAACGACAAGAAGATCAGATTGGAAAGAAAGGAGGAGCAGAGggtgaaatatttaaaaagagaCTGAGGCGAGATGAGCAGAGAGAAGCCAAAGTCAAAGAGTCACCGGCAAAAActtagagaagagagagaataaaTCAGAGCAGCTGGGGGGAGAAACTGCGCTAcgccttttctttttccttattTCTTCTGTCCCTCTACTACTTCATaaaacagaggaggagagacacaATGAGGAGAGCGGAAGAGAGTCGAGGAAgatagaagaagaaggaggagaggaagcagACTTTTTCTTCAAATTCCAGATAGATACACAAGATATTTAAGTGCAAGAGACAAATCCAATGGCGTGCTACTACATTGTGATCAGTTCCACCCACCTGCATGATGGGCAGCTGAGGAGCATCAAGGGGGTGTTCAGAGGTCCAATAGGAACCAACAGCCAAAGAAACACGGAGGAAGGAGACTCCAGTTTTTACTGCGAGCTTTGCGATAAGCAGTACGTGAGACACCAGCAGTACGACAACCACATCAACTCCTACGACCACCACCACAAGCAGCGCCTCAAGGAGCTGAAACAGAGGGAGTTCTACAGAGCGCTGGCCTGCAGGAGGCAGAGGAGACgcagggaggagaagagagagctgAGGAGGCTCCAGAAGCATGAAGAGAGGAGAACGGGGGAGTGcgCTCCAGGTTCTGGTCCCATGTTCCGGTCCACCACAGTGGCAGTGGAACCAGCAAACCAGACCAGACCGGACTCTGTGCAGAACTGGGGCGACAACAACACGAGCAGCGCCACACAGGGAACAAATCCTCAAACACCGCTGATCCAGCCCTTCCTTCCCCTGGACCCTGCACTGGAAACCAGACTCCTGAGCAACACGCAGTGGGCTTACGACCCAATGGACACCAACAGCACTCAGACTACTGCTGCTGAATCCTGCATCCTCAACGAGACCCAAATGGACTACAATGAGCTGACCACAAACAACACAATGAACACAAATATCAACACTACCAAAACCAGGCACTTTAACAAGATCCCTTGGGCTCACAATTATTTAAGCAACCCCATTACTCCCAATAACATCCCAACGACTGCCACCAACACCGCCACTAATGGCTCCATTTTCAACACAACCACCGCGACCAACTTCAGCAAGAAAATCACCCCGGCCATTACTACTAACGCGGCCGACATCGGCGACAACAGTGGCGGAGCAGTGTGCGGACCAAGCGTCCAGTCCATCCGCAGCAGAGTCCGCCCCGTGTCCTTCTCACTGCCCAAAAGGAGCTGTGTCCTCCTCCACCAATCAGCTGCCGTCTTCATCCAAGCCGGGCGAGGCTCTGGCTTGTCGGGGAAGCAAGAAGGTGTGATGGCGCAAGAAAGAGTCAAAGATCCGGGGGAAAAAGTTGCAGATCAGCAGCTCAAATCTCCAGTATCTGCAGACGTGGACGTTGTAGGCATGTGCCACTCGGACACTGGAAACCAGCGCAGTGTGGACATTAAAACTGCAATCCAGCACTCTGAGGCTGGAACCAATATGCCTCCTGAGAGGGGAACTGGAGGACTCTCTGGGACTGGAGCCCAGGTTTCTTTATTTAATCGCAATGTAATCAGAGTTGAGGACTTTGTTATCAGTGGGAATGGAGCCCAGCACTCCTTATGTAATGACAACGGGACTGGAGCCCAAGTCGGCAGGGAAAGTGGGACTGGAGCTCATCAATATTTAAACAGTGGGATACCAGGGCAGATTTCTGACAGTGTTAGCACAGTTGATGCTAAAGATTCAGTATGCAGAGACAGCGAGGCTGAAACCCACGGCGATGTGGCCTATCGTACAGAGTTAAACCCCACCCAAGAATTGAAAGATCTGCTTAGTCCCGCTACAAATCAGCAAAAGTCAATAGCTGGTGTTTTAAATGACACCAAAGAGTCTTCAATCCAAACACAGCCCAAAGAATCAAGTTTCTCTCTGTCAAACGGGGCTAAAGAATCAACTTTTTTGCCTACAAATCGCCCCAAAGAGCCGTTTTGCCGCGTCCTGAGCAGAGACGGTAGCCGGGTTCTTCTCTGGCCGTCGGAGATGGTTAGCTACACCAAGACCTTGCCCTCCATCTCCTACAGCATAAACCCTCTACTGTACGACTTCAGAGCACATAACAGGGCCAAGGAAGGGGGTGAGGAAAAGAAAGGGctagaggaagggagggagagaataaAGCCGTCTGTGATCAAACAACCTGACTGCCAACAGAGGCAGGAAGCtatggagggaggaagggaggtgAAGATAGATGAAAGGGAAGAAGGAAGACAGGCAGGTAATCCTATGGAACCTGTAGCCCATTGTAGCGGTGGCGGCGCGGTTCCGGCACGCTGCGGCTGCCGCGATGAAAGCGCTTTAAAATTTGTTCCAGTTTCCGCAGAGTGCCACCTTGCACCGTCGCTGGGCCTTCAAAAAACaggcaggaagaggaggaggaagaggaggggaggggtgaGGAGAGGAATGAGGAAGAGGGGtaggaggaaaagaggagaggagaccgAAAGGGGAAGAAGGATAATAAGTAGAGTTTCTGAGAACCAGATGTTTGAAgggagaggagacgagaggtTGAAAAGAGAGGGCAgcgaaaaagaggagaggagagaaaaagggcTATTAAGTAACCCTGCAGTGCATCGGCTGgtaggagggagagaaaagaagatgaggggagaggagagaaggataAGAGGAGATCAGTCAGAGCGAGAGAGGGCAGGTAGAAATGACGAGAAGAGAGGAGCGCTATTAAGTAATCTTCCTGTGAATCGGTGTAATCGGTGTAACCAGCTGTGTCTGCAGGTGAAAAGGGAGGCCAGCAAGCATCAATCCCAGCAATCAGCCTCCGGGTGGGGCCAGGGGCTCAGAAAGCTCCTCTGTAGGGGTGCAGCATGTAACTCAGTGATTAGCCCCGTCCCTGGGTCTGTTATAGAGACGCCATGCTGTCCTGCAATTACACCCGAGCCTGCTCTGAATGACAGAGAGACGGGGGAGATGCACAAAAATACACAAGCAGGGAAGCACGAAGGGCAGAGACATGAGGAGCAAAGCAATCTGAGCAAGACAGAGATAAGCGCCGTTCAGGATGCTAAAGAAAACGCGTGTAACCTAGTGATTAGCGGTGATTCTTTTCCCTGTCGAGAAGCAGCGCGCGAGCCAGAAATGTGTCTTGTTCCTACACCTCATAGGGAAACAGCATGGGATCCAGCGATTAGCCTTGTCCCCGCACCCTTTAGAGGAACAGCGGGTagtcaaagacaaacaatacCTGCAGCAAGCAGCCATCCTGCGTTAGGCCTGGCCCCACGCTGCTCCGcacaacagacagaaacacagccGAGAATCAGATCGGCCTGCGGAGACATGACCCTCCCTGGCGGTGCAACGTTTTCGATGTTGAAGAGAGTAGAAACAACCCGgcaagagaaagacagaacCGCCCGAGGCTGGGGAAACGCCAAAGAAGAAACGGAAAAGGGGAAGGAGACAAACGAGGAGAGCTGTAGGTGTTTTGAGACAGGAAAGGGCGTGCGAGGATGCCGCAAAACTCAACAAGACTGGGACACTTCTGGACAACTGCCTGGGCAGTCCAGAGGGCGACAGGACGGAGAGAAACACAGACTGCCACTCCGGGATGAAACACCGTCTGTGTCATGAACCAAATAACAGCGAGGGAACGTTTACCTGTAACAGCGCTGACAAACTCAAACACCACTGCCGCCCTCC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784314.1 True 3855 mRNA 0.51 5 6596041 6672024

Neighbor

gene id symbol gene type direction distance location
LOC120547793 LOC108247470,LOC106529920,LOC107096283,LOC102227626 coding upstream 12303 6553886 ~ 6583738 (+)
plekha3 plekha3,LOC102799655,LOC103387813 coding upstream 128813 6447144 ~ 6467228 (+)
pdxkb LOC104925589,LOC107376125,LOC100693660,LOC103151893,LOC103476575,LOC101069818,LOC106527750,LOC103387811 coding upstream 164911 6401031 ~ 6431130 (+)
LOC120548010 itsn1 coding upstream 218625 6368037 ~ 6377416 (+)
setd4 setd4,LOC102797995 coding upstream 287842 6296247 ~ 6308199 (+)
LOC120547615 LOC102195517,LOC102294040,LOC101480586,LOC100690426,LOC101068904 coding downstream 157547 6829571 ~ 6837990 (+)
supt3h supt3h coding downstream 170469 6842493 ~ 6860186 (+)
cdh11 cdh11 coding downstream 1021564 7693588 ~ 7790218 (+)
chrna1 chrna1,LOC103363491,LOC446087 coding downstream 1215964 7887988 ~ 7905745 (+)
LOC120547970 NA coding downstream 1261101 7933125 ~ 7938496 (+)
G192214 NA non-coding upstream 85599 6509724 ~ 6510442 (+)
G192212 NA non-coding upstream 88605 6506321 ~ 6507436 (+)
G192205 NA non-coding upstream 117807 6477911 ~ 6478234 (+)
G192203 NA non-coding upstream 124160 6471539 ~ 6471881 (+)
G192143 NA non-coding upstream 280940 6311396 ~ 6315101 (+)
G192244 NA non-coding downstream 2591 6674615 ~ 6675983 (+)
G192252 NA non-coding downstream 15308 6687332 ~ 6687575 (+)
G192282 LOC103387761,LOC103476592,LOC106529247,LOC108242979,LOC102217296 non-coding downstream 161993 6834017 ~ 6934678 (+)
G192283 cdc5l,LOC101487762 non-coding downstream 188302 6860326 ~ 6862811 (+)
G192329 LOC108281047 non-coding downstream 450176 7122200 ~ 7123178 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 90190 6485581 ~ 6505851 (+)
si:dkey-22n8.3 LOC103376236 other upstream 199142 6020122 ~ 6396899 (+)
itsn1 itsn1 other upstream 235050 6324515 ~ 6360991 (+)
atrnl1a LOC102310066,LOC100692310,LOC101487275 other upstream 1347305 4903722 ~ 5248736 (+)
G192040 LOC104951079 other upstream 1709018 4886376 ~ 4887023 (+)
zc3h15 zc3h15 other downstream 103719 6775743 ~ 6789086 (+)
LOC120547751 LOC103371019,LOC107095977 other downstream 128490 6800514 ~ 6804552 (+)
bean1 bean1,LOC102779979 other downstream 1394312 8066336 ~ 8119063 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 2442632 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 2824767 9496791 ~ 9602882 (+)

Expression


Co-expression Network