LOC120548362


Basic Information

Item Value
gene id LOC120548362
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9327374 ~ 9333998 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784595.1
GCGGCGCCGTCGAGCGAACTGCGACCAAAAAACCGCCCGGCATCCGTAGTTTGATGACGTTGCAGCCAACATGGCGGCGTGCTCTGAATGAATGAGCTCAAGGCAGAAACACAACAAACGTGTTTGCGAAAACACTGACGAACCGTGACTATAACGTGTCAGCAGCGTTGTCTTAAACCACGGAGCATCCACCAAGAAGCAGTTAAAACAATAATGTTCAGCAGAGGCTGCTGCTGTTTTACTGAACGATGTCAGAGCCGAGGACACATGATGTTGCTGCTCCTGAGTTCACTGAGCTGTGGGGGAGTGTTTCCAAACTTTCCAACAACAATATACAAGACACGAAAACAGGACAGCAGCTGAATGGCACATCAACATCAACGATGTGTAAAGATTTGCAGAGCCCTAAGCGCAGAGGCTACAGCAGATACCCCGGCTTGAATAACGGGGATTCTCCAGGTGATGTGGAACCAACGCAAGACATTTTCTGGGATCCCACATCGCCCACTTCAGCTAGTACTGGGTCGGGGCTCAGGAACACCAGAGTTGTGGAAATATCAGATATTGTCAACCGTATTGCTCCAAAGGATGTGATACGGAAAGGGACTGaatctcctctgctgcagtggaTAGGTGACAGTGCCGTCCCATGCACACCCGACATTCCAAAGCCAAGAGCCAGGAAGAAGTCCTCTCGGCAGAGCAGTGTGGACGACCTCATGAAACTGGCCAGGCAGTTTGACGAGAACATGCAGCAAGACAGGGAGACTTCAGAACAGCTTAACGCTGTCAACAATAACCTCAATGAATGTGTGAACACTTCCAAAACAAAACTGTCAGAGACATCATTCCCAAGCAACGTGAAGGACCTAAAGTGTCCATCCTCATCGGATCAGGTGGAGGCAGAGCTGCACGCTCTGTTTGACTGCTCCACTCAAAGAGTCAGTGGCCGGCTAAGCCAGGGCTCCTCCACATCGGTCCGTTCACAGGAAATAAAACGCCAACCTTTGACTTCAACTTCAGCTGAACCCAGACAGCCAGAGCTCCAGTCACCTGACAAGTCTGGCCCGGCTGCACATCCTGTTGGAGAAAAAGGACCTTGTGTTCTAAGTGTGAACAACTGTGATGACTTTGATGACGACTGGGAGAATGATGACCTACTTAATGACTCTTTTGTGCTGGCAATGACCCAGAATCCTGACCAGCAACATGACACCAACCCTAAAACCACCTCGAAGTCTGACACTAAGACAAACACTACTCGGTTCACCTCCGTTTGCAGGCCTACTGCAAATACGAACTCTGCACATCAGCCTTCGAACTTGCACTCAAAGCCAAGCTGCAGTGTACTACAGGAACTGTGTCCCATGCCAAAGACTACCAACCGAAGCACTTTCAAGTTAGAGCCCAACCCTCACTTCCAGCCCAAGACGCCTGCCAAGGAGGTATCCGAGTCCAACTTCCCTGTTATACAACTTAAGTCAAAGACATCTGACCAGAAATCTGCTACCACAAAGACACTGTCTATTCCTATTCCTGGCAAGATCACTAAATATCAGAAGGGGACACATGAAGCTGCAGACTCTGCTAAAGACATTTCAGACAGCTTATGGGATGATGGGGACGATGACGCACTGCTCTACCAGGTATGTGACCGCGTGGAGAGGATCTCCAACAGTCAGCCACAGCAAGCGAGCCCTAGCAACTGCCAAGAAAAACAAGATACTGCTGTAGACAGACAGCGAAAAAACCCTGCGCCTCTGCCAGTCGACATGTCCTGGGCCACGAATGCCGGTGCCAGTGCTATTAGACAGTCGCCATGTGCTTTTGTTCGTTTTAACTCATTACCAGGGACCAGCAGGGAAACTGTGAACTACCAAGGATGGAACATTCCCATGAAAGGTGCCAACGACAAATCACGGATGTCTCAGAGCCTCCCGGGAAGCAGTGTGAGTCTGGGCACATTTAACCATTGCAGGGATTCCTCTGGAACTTTCCAGGCTACGAATGCTACTGTGGATCTGAAGCCACATACAGTGACAGCCAGGGCACCGCAGAACTCCAAGTCCCATCACTCAGCCTTCAAGAGAAATGTATCTGACTCAGCAGCTATAAGCAACAAAGtttttgtcacaAGCCAAGTGACATGGAAGTGCTCTGCAGCCGAGATTGAGAGAAAGAAGCAGGAGGCCTTGGCCAGGAGGCGACTGCGAATGCAGAACGCCCCAAAACCATAGAGGAGCTTCGTCCTGATTGAAGGGAtattattttactgtaatgaGCCTTTATAAAACTCGTCATTCCACTCCAGTGGTTCAGCCACCTCCTTATCAAGATCTTACCGATGATGATATCCAGGATGATATCATGTCAACGTTAATAGTTCAGTGTTAAAGATTTATTACAGAACGGACCTAGTGTCTGTTGGAAGAGCTGCTGGATGTTTTTGCTGCAAATGTAGAAACATGTTTATAAAAAGCGAGTTTTATGCACAGATTGATGCAAGTCTCAGATCTGGTGTTGGAATAACATTAAAAAGAGATTTTCATTAGCTTTTTCACATTCTGACAAATTGTTTTTACATCCACATTTTTGTCTATCCTTTGATTTTTGCACAGGTCAGAATTAAGTGTTATACTGTAAAGACAGTGTTATGGCCCTTCTCTGTAGGCACAATTTAGTGAATTGCCACGTTATGCACCTGAGGAAGATAGactgcagttttctttacaagtTTTGATCAGCTGTGTTACTGTATAGGGGTAGACCTGGGAtagacaggtgagacaacaaTCAGATAACCCATTTGTTTCTATCTTAGTGCCTTAGTAGTTAATGAGTTTAACTCCAGCCCCTGTTATTTCACAACATGATCGACTTGGCTGTACACATTCTGCTAATTTATCATTTATCATGATGTTTAAGCCTAGTATGAACACTTTATACTATTACTAGTTTCTGTGCTTTGCTCTTACAGTACCAGCCAAACCCAAAATAAAGGAATAAACATTTGAGACTGTGAATAAACTGCTCCAATCACA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784595.1 True 3041 mRNA 0.47 6 9327374 9333998

Neighbor

gene id symbol gene type direction distance location
LOC120548133 actr2,LOC104930021,LOC108423375,LOC105008543 coding upstream 379269 8930547 ~ 8948105 (+)
aftphb NA coding upstream 399884 8917425 ~ 8927490 (+)
LOC120547907 lgalsl,LOC104930018,LOC102203068 coding upstream 411678 8893346 ~ 8915696 (+)
LOC120547906 NA coding upstream 415042 8909665 ~ 8912332 (+)
ugp2b LOC103372870,LOC102201608,LOC102306689 coding upstream 531782 8750738 ~ 8795592 (+)
LOC120547702 LOC101470025,LOC103386883 coding downstream 87346 9421344 ~ 9437910 (+)
pno1 pno1 coding downstream 108878 9442876 ~ 9447476 (+)
LOC120548339 NA coding downstream 413310 9747308 ~ 9754782 (+)
mrps5 mrps5 coding downstream 763734 10097732 ~ 10123497 (+)
zgc:65997 LOC101480976,LOC102212345,LOC100706081,LOC104967569,LOC107089893,LOC105937212 coding downstream 849098 10183096 ~ 10187447 (+)
LOC120548135 NA non-coding upstream 268956 8977204 ~ 9058418 (+)
G192530 NA non-coding upstream 422497 8857991 ~ 8904877 (+)
G192464 NA non-coding upstream 949675 8369378 ~ 8377699 (+)
LOC120548141 NA non-coding upstream 1198011 8126718 ~ 8129363 (+)
G192413 NA non-coding upstream 1201381 8124918 ~ 8125993 (+)
G192633 NA non-coding downstream 63550 9397548 ~ 9419324 (+)
G192634 NA non-coding downstream 70404 9404402 ~ 9449821 (+)
G192667 NA non-coding downstream 153765 9487763 ~ 9491128 (+)
G192691 LOC104930997,LOC101166076,LOC103372934,LOC102208791 non-coding downstream 300767 9634765 ~ 9638011 (+)
G192692 eef1a1a,LOC103386869,LOC105912050,LOC103476462,LOC106576970 non-coding downstream 304383 9638381 ~ 9640978 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other upstream 131958 9114656 ~ 9195416 (+)
bean1 bean1,LOC102779979 other upstream 1208311 8066336 ~ 8119063 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 2522822 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 2538288 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 2821523 6485581 ~ 6505851 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 162793 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 272527 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 319906 9653904 ~ 9673252 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 859031 10193029 ~ 10219271 (+)
LOC120547507 NA other downstream 930099 10264097 ~ 10292289 (+)

Expression


Co-expression Network