LOC120548392 (LOC104932692,LOC100711168,LOC102780655,LOC102196724,LOC101475056)


Basic Information

Item Value
gene id LOC120548392
gene name LOC104932692,LOC100711168,LOC102780655,LOC102196724,LOC101475056
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8130582 ~ 8137806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784656.1
TTCACAAAGTTGAAGTTCAGTTCAATCAGCTAAACCTGTTCAATGTCCGTCTTTTGAGGCAAATTGTTGAAGACAGGACAGAAGTTACAGGAGAAAATTAAATTACAATAAACGAGGAGGAAACGAGGTAAAACGTGCTGTGTGGTAGGCTAGGGTTacacaaatgtcaacattttCCCTCGACATTAAGAGAGTTATAAGAGAGTCGCCGGCTGCCATGTGATCCGTCTGCCGATGCCAGCCAAAATGTCACCCGTCATTTGTAGCATGTTGCCCGGTAAGCGACACCCCCCTTCGTCGGTGTCGTCCAACTGAGCTGCAACACGTCGACTTTGTTTAAATTCAGATTTCAGCGAAGTTTGCCGGTGAACAGGGTAGCCTCAGCAAGGAGCAACATGCGGTCCTTAGCGGGACTTGGTGCCATTGTGGCGGCGGCGAGTGTCTTCCTCTACCTGCTGTCGACTCATCTTCCCCCGGGACCGACGCACGCCCAGCCGTACTCAGAGGGGGATGAAGAGGGGGATGAAGAGGGGGTCAAGGAGTACAGGCTGAAGTTCCCGTCGGACCTGGATGAGCTGCGGGAGCTCGCAGAGATGCTCAAGTTTTATAAAAGAGAACATCACGGCTACGTTCTGCTGCTGTTCTGCAGCGCCTACCTCTACAAACAGTCCTTCGCCATACCTGGCTCCTCCTTTCTGAACATGCTAGCTGGTGCAATATTTGGACCGTGGGAGGGTCTGGTGTTGGCCTGCCTGCTCACCACTGTTGGCTCCACATTCTGCTTCCTGCTCTCCTCTGCGTTTGGAAAGCGACACGTGGTTCATTTCTTCCCGGAGAAGGTGGCCCTGCTGCAGCGGAAGGTGGAGGAAAATCGTAGCAGTTtgttcttcttcctccttttcctTCGTTTCTTCCCTATGACTCCTAACTGGTTCCTTAACATCACCTGTCCTGTCCTCAACATCCCTATGcccattttcttcttctctgtatTCATAGGTCTGATCCCGTACAACTTCATCTGTGTTCGCACGGGCTCCATCCTCTCAGAGATCTCCTCCCTGGATGATATCTTCTCCTGGGGGACGCTGGCCCAGCTCCTGGCCATCGCTCTCATGGCTCTCCTCCCTGGAGCGCTGATCAAACAGTACAGCAAAGCTCACCTTGAGGTGGGCGGCATGGACTGTAACGGACCCAGCCAGGCTGATACCAGGCAGGACCGGAAGAGACGATGATTCTGGGATGAATGGGGAATCGTAGGGTTTGGGATTCCCAAACCAGACATTGTGTTTGAAGAATTGAAAAACCTCTCTCCACTGGTAGGCCTGTGACCTGTTGTCCACTTCAGCCTCGTGATTTCTGTAAGGTCCCGCCAAAGGCTCATCATACTTCTAGTATGATCTGTCCTGAAAGTTTGGAAGTGTCTGCAGCTCATGTTACACCAGGCTTTAAGACTACAGTTTCCCAAAGATCTCTCAATGCCAATATATAGAGCTAGAGTTTTAGGGAAATCTTCTGAGATGGGCCATAAAATTCCGTAGATTCACAATAAAACAAGGTCTTAAAAGTTGAGGCTGATTGGTTGCTCAATAGTTCACATCCTAGGAAAGAATTCTGTGATGATTAGTGATATAGTGatacagcagctttaaaaataatgaaatcaTTTTGGTCGTCTTGACCTCGTCTTTTTTggtgtttgaaaaaaaactgaggaATGCTCCCAAAACGCACACTTGATTCTTTTTTGAATTTCTCCAAACTATATCTTCAATTTCGGTGAATTGTTGAGATGATGTGGAAAGTTCATAATCTCTCACTGACGTGATCACTCTGATCTCAGTTGGAATTCATCCCAGGGCCAACCAAAGGCTGACCTATGATGCAATAACGTGTTAGTGATCTGTTGTGCGTCATTACGCTGTTTTGCGTTTCTTTCCCGGTCGACCATGACTGCAGTTGTAAATTCGGACCTTCTGTCCAGTGCGTTGCCATTGTGCCAAGACATTACTAGAGCTTTAAAAGTAATTTGCTCTGTGTAATAAATATAAGAGCTGACCCTGCTGTGGAGAAATCTGTTCTGGCTTAAACACACCGATACACTTAGGAGTTTGGAGATCAGACAAATAACCAGCTAGACAATAATGTCTTTTCTCACATACGTTTACTCAGTGACTCAGTTTGCAGCTGCTTTGGTTCCAGGAATTGCAtggaaaaaacattttagcaAATTTGGACTTTTAAATGTCTCACGAttga

Function

NR:

description
PREDICTED: transmembrane protein 41A-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784656.1 True 2259 mRNA 0.47 5 8130582 8137806

Neighbor

gene id symbol gene type direction distance location
cdh5 LOC104953929 coding upstream 72698 8020660 ~ 8057884 (+)
mtx2 mtx2 coding upstream 148904 7972431 ~ 7981678 (+)
LOC120548260 LOC102194925,LOC102289369,LOC102779125,LOC100534467,LOC101476625,LOC104955261 coding upstream 160269 7967372 ~ 7970313 (+)
trnaq-cug_15 NA coding upstream 179394 7951117 ~ 7951188 (+)
LOC120547971 LOC102778848,LOC102194630,LOC102290574,LOC101476901,LOC100711709 coding upstream 182761 7942709 ~ 7947821 (+)
LOC120548244 LOC101474016,LOC102312708,LOC102214986 coding downstream 117608 8255414 ~ 8328929 (+)
b3gnt2b b3gnt2,LOC104931834,LOC103361191,LOC101061479,LOC108242584 coding downstream 282773 8420579 ~ 8450391 (+)
ehbp1 ehbp1 coding downstream 343620 8481426 ~ 8641787 (+)
otx1 otx1,LOC101469289,LOC105933319,LOC108245829,LOC103361189,LOC103152463,LOC106955545 coding downstream 508075 8645881 ~ 8653172 (+)
mdh1ab LOC103372869,LOC100711978,LOC106913728,LOC102307187 coding downstream 605201 8743007 ~ 8748910 (+)
LOC120548141 NA non-coding upstream 1219 8126718 ~ 8129363 (+)
G192413 NA non-coding upstream 4589 8124918 ~ 8125993 (+)
G192412 NA non-coding upstream 55623 8073781 ~ 8074959 (+)
G192381 NA non-coding upstream 178457 7907763 ~ 7952125 (+)
G192375 NA non-coding upstream 223642 7906570 ~ 7906940 (+)
G192464 NA non-coding downstream 231572 8369378 ~ 8377699 (+)
G192530 NA non-coding downstream 720185 8857991 ~ 8904877 (+)
LOC120548135 NA non-coding downstream 839398 8977204 ~ 9058418 (+)
G192633 NA non-coding downstream 1259742 9397548 ~ 9419324 (+)
G192634 NA non-coding downstream 1266596 9404402 ~ 9449821 (+)
bean1 bean1,LOC102779979 other upstream 11519 8066336 ~ 8119063 (+)
LOC120547751 LOC103371019,LOC107095977 other upstream 1326030 6800514 ~ 6804552 (+)
zc3h15 zc3h15 other upstream 1341496 6775743 ~ 6789086 (+)
LOC120548025 ppp1r1c,LOC106939859 other upstream 1624731 6485581 ~ 6505851 (+)
si:dkey-22n8.3 LOC103376236 other upstream 1733683 6020122 ~ 6396899 (+)
meis1b meis1,LOC101073206,LOC106613898,LOC103387108 other downstream 976850 9114656 ~ 9195416 (+)
kcnq5a LOC101074332,LOC101486129 other downstream 1358985 9496791 ~ 9602882 (+)
ddx43 ddx43,LOC107693529,LOC107588708 other downstream 1468719 9606525 ~ 9624564 (+)
arhgef33 arhgef33,LOC107098984 other downstream 1516098 9653904 ~ 9673252 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other downstream 2055223 10193029 ~ 10219271 (+)

Expression


Co-expression Network