LOC120548518 (LOC103361435,LOC104937509)


Basic Information

Item Value
gene id LOC120548518
gene name LOC103361435,LOC104937509
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3480321 ~ 3492373 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784798.1
ACCAACGTCATCGGCTGAAGGTGGATCACGCCGTGCAGCCTTTTCTATAAAACCCCCCCGCAGCCCGCTCGCTGTGGAGGAACAGTCACCGGGGTTTGGGCAGAGGAGGCGACAAGGAGAACTTGGTTTCAAAGCGCACGGATTTATCTCGCCGCTGACACAAGAGCTGCTGAAGAGTTTACCGGGGGGAAAagcagaaaaggaaaaagaaaaaaagtaggaGAAACTGGACGGAGGGGAAGATTTACGCACCGCCGAGCTTTGAACGGAACAGAAGCGCCTTTTACGCACAGACACAGGTGGATGCTGGGAAGCGGACCCTCTCGTAGGAGATGTTACCCCTGGCACAGTTCGGGGTCCTGTCGGCCCTGACCACCGCGCTCACCTCGGTCCTGTCCGCGCTCTTGCTGCTGGCGCTGACCCGGCAGCTGTGGAGCCTCCGCTGGAGCCTGACCCGGGACAAAGAGAGCAGCCTGCCGCTGCCGAAGGGCTCCATGGGCTGGCCACTAGTCGGGGAGACTTTCCACTGGCTTTTCCAGGGTTCCAACTTCCACATCTCGCGCAGAGAGCGTCACGGCAACGTGTTTAAGACCCATCTCCTTGGGAAACCCGTCATCCGGGTGACGGGCGCAGAAAACATCCGCAAGATCCTGCTGGGCGAACACAGCCTGGTGTGCACCCAGTGGCCCCAGAGCACCCGCATCATCTTGGGACCCAACACCTTGGTCAACTCCATCGGAGACCTGCacaagaggaagagaaaaATCCTGGCTAAAGTGTTTAGCCGGGGGGCTCTGGAGTCCTACCTGCCCCGGCTGCAGGACGTCGTCAAGTCTGAAGTCGCTAAGTGGTGCTCGGAGCCGGGCGCCATCGACGTTTACAGCGCCGCCAAGGCCCTGACGTTTCGCATCGCCGTCAGAGTCCTGCTGGGTCTGCAGATGGAGGAGGAGCGGATCGTTTACCTGGCCCAAATCTTTGAGCAGCTGATGAACAACCTCTTCTCGCTCCCCATAGATGCTCCGCTCAGTGGGCTACGCAAGGGGATAAAAGCCAGGGAAATCTTGCACGCCAACATGGAGAAAATCattgaggaaaagatggatcGGCAGCAGGCGGAGGAGGAATACCACGATGCCTTCGACTACATATTGTTCAGCTCCAAAGAGCATGGCCATCAGCTCAGCATCCAGGAGCTCAAGGAAACGGCAGTAGAGTTGATCTTCGCTGCTCACTCCACCACCGCCAGCGCCTCCACATCGCTAATTCTTCAGCTTCTTCGCCATCCAGAGGTGGTTGAGAGGGCCAGGGTCGAGCTGGAGGCCGAGGGCCTCGGCTGCGAATCCCACAGCAGTCCCAGCCCACCGGCTGTCGCcatggagaaagaggaggacacagagacaaccTGCTTGCTGAACGGAGGCTGTCAAAATCACAGCGATGGTTTCCCACAGACCCAGTCTCACGTGCCGTATCTGAGCCTGGACAAGCTGAGCCAGCTCCGCTACGTCGACTGTGTTGTCAAAGAGGTTCTCCGCTTCCTGCCGCCAGTCTCGGGTGGTTACCGGACAGCCCTGCAGACGTTTGAATTAGACGGCTACCAGATCCCCAAAGGCTGGAGTGTAATGTACAGCATCCGGGACACCCATGAGACCGCAGCGGTCTTCCAGAGCCCGGAGCTGTTTGACCCAGACCGGTTCGGCCCAGAACGGGAGGAGTGTCGGTCGGCTCGGTTCAGCTACGTGCCGTTCGGCGGTGGCGTGCGGAGCTGCGTAGGGAAAGAACTGGCACAGATCATCCTAAAGACTCTGGCTGTGGAGCTGATCGGGACTTGCAAATGGACTCTGGCCACGGAGAACTTTCCCAAGATGCAGACAGTGCCGATAGTGCACCCGGTAAACGGGCTGCATGTGCATTTCACTTACCTGCGTAAGTAATTTAACTTTCAATGTGGTGCTGGAAAAAAACTCTCCAAGCCCAAGGAAGGAGGCACACACAACATGCCAGGCCTGATGGCACAGTTTAGGTGCCCTTTTCTTTTCCACGGACATGAATAAGGGGTTTACATCGCTGGTTTGGAGCGCGTCATCATCCCTTTGGTGGTTTGGTCCAAAACTAAGACGCCACTTGTCGTAGCACAAGTACATTTTTAACCTCCTAATCTGTTCACCTGCCATTTCCCAGCTTTTACTATTCTTTACATGCATTTTTTAAGTTATTCATGTATCGAGTTGCAGTGCAAAAAGCAGCATTTTTCTTCCTTATTTTCAGACAGAAGGTCAGGGTTTGCCCTGCTGAATGGACTGCATGCACACTTAAGTTACAACAGCAAACGTTTCTATTCAgagctaaaaaaacaaacatgtaagTGCCTCATGAAAAGACTTCAGGCACATTTTTGTATAACAGAATAGAAAGACTTTCTATGAAGCCAGCTTTGCTCCAAGTTTCTTGGCTCTGATGAAGCCCAGGGACAAAGATGCAGCATTTTGTTGTGATATGCAAAGCGGTTTACAGATTTTAAAATCCACTTTTATATTTTCTACATCTTAATATCTTTTACATCAATGTGTATCAGTAGGGACATACCCATGGGCTATGCATGCTGACATTAGTCATAAGTATTTGACTCTACTTACATTTACAAAACCTTTAAGTTTCACGGTGAGCCttttcacaaaaataaattcttCCAGTCTAGGGACAGAAGTGGGAAAATCACCTTCAATGACTGTTTAGACCTTCAAGTTGTTTCTATTTACATCTTATCACTAGGGTTGGGTGCCGAAACCTCcatgctaatacggcaccggtgccttaaccaCCGGTATCTACCTGACGGAATGGCAACGCGGATTTCGTTGCCTCATTtcagtgccacttaaatgcctgcgctgctctctgatgctccaaaaagTATCGCTgaacgtgacgctagttaacactacacttggcagcaggtaacgttagtctaccgttagctagtagctggattaaacaaaGTTAAAATGAGAGTTAAACGGTGTagagtgtgactgtatttcactgtagaggattccaacaccaggACGttcaacagtctgcagctgccgttgtcgtaAAAACGCCAACGGTATGTTTACTTGAAACTAGTAAGCCTTgaggtgcattcaaagttattgaaaaaaataccattttcccattcagtggttgtttttgttttaccagcaatt

Function

NR:

description
PREDICTED: cytochrome P450 26B1

GO:

id name namespace
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0042573 retinoic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12665 CYP26C; cytochrome P450 family 26 subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784798.1 True 3209 mRNA 0.51 7 3480321 3492373

Neighbor

gene id symbol gene type direction distance location
LOC120548100 LOC103372105 coding upstream 98230 3347038 ~ 3382091 (+)
LOC120548121 NA coding upstream 153271 3326153 ~ 3327050 (+)
LOC120547573 NA coding upstream 172321 3306378 ~ 3308000 (+)
slc22a15 slc22a15 coding upstream 177035 3276644 ~ 3303286 (+)
LOC120547879 NA coding upstream 212240 3260722 ~ 3268081 (+)
LOC120548444 LOC108246626 coding downstream 40341 3532714 ~ 3534228 (+)
fgfbp3 fgfbp3 coding downstream 55731 3548104 ~ 3561420 (+)
ppp1r3ca ppp1r3c coding downstream 96852 3589225 ~ 3591796 (+)
LOC120547503 ankrd1 coding downstream 321034 3813407 ~ 3827078 (+)
LOC120548162 NA coding downstream 340213 3832586 ~ 3845675 (+)
G191656 NA non-coding upstream 46717 3433346 ~ 3433604 (+)
G191654 NA non-coding upstream 82594 3397395 ~ 3397727 (+)
G191650 NA non-coding upstream 166104 3309048 ~ 3314217 (+)
G191610 NA non-coding upstream 333472 3142057 ~ 3146849 (+)
G191617 NA non-coding upstream 424085 3055902 ~ 3056236 (+)
G191785 NA non-coding downstream 130977 3623350 ~ 3624702 (+)
G191787 NA non-coding downstream 134282 3626655 ~ 3626919 (+)
G191789 NA non-coding downstream 145806 3638179 ~ 3640170 (+)
G191790 NA non-coding downstream 148245 3640618 ~ 3643020 (+)
G191793 NA non-coding downstream 210219 3702592 ~ 3730541 (+)
LOC120547552 NA other upstream 141236 3163824 ~ 3339085 (+)
LOC120548437 NA other upstream 369363 3093967 ~ 3110958 (+)
G191571 NA other upstream 461873 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other upstream 701954 2775308 ~ 2778367 (+)
G191567 sptbn1 other upstream 714259 2762050 ~ 2766062 (+)
arfgef3 arfgef3,LOC102791283 other downstream 758232 4250605 ~ 4347579 (+)
G191903 NA other downstream 795524 4287897 ~ 4288644 (+)
LOC120548449 NA other downstream 874778 4367151 ~ 4368326 (+)
LOC120548511 LOC101485366,LOC100693926 other downstream 1136684 4629057 ~ 4678348 (+)
G192040 LOC104951079 other downstream 1394003 4886376 ~ 4887023 (+)

Expression


Co-expression Network