mtrf1l (mtrf1l,LOC106904956,LOC103137471)


Basic Information

Item Value
gene id mtrf1l
gene name mtrf1l,LOC106904956,LOC103137471
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10551492 ~ 10557691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784931.1
GTATGACCGGAATTCTACAAACAGAAGAAGACGTCTTTCTACTGCGCATGCGTGTCACATTCAAAATGTCTGCGCCCTTCAACAAGGTGGTAAAGGAACAAAATGTGTATAACAAGCATTAATAATTGGTTGCTAGGCTGTCTTTAGACAATGTATGACTGAGACCGGTTTAGTTATAGCTGCAGCGATGTTTTCGACAACAGGATATATCTAACGGAGGCATttggctgtttgttttttgatttCAAGATCACACATTGTCTAGTTAGCTAGAAACACTCAGTGAGTTGTTTATTTTCTCAAATGCTCTCATTTGAATTAGTGGGCTGGATTTATCTATTAGGATTTTGTGattccacatttaaaaaaaatccggTTAGGTTGTGGTAGTCGTCTTCAACAGAAATACCGCACAAAACTGATTGTGTTTAGTGATGTAGCTAAACCTgctaatttctttttaaaatgtcatcaAAATAAAGCACTGCTTGTCGTAATACCTACATGGCGAATTGCCGAATTAAAGAATGCCTGTGTCGGATACATAATATATCTTAATATAGCAATTACAGAGGTATACATTTTGTtagtaataaaaacatatacaatCATACCATTTTTGAATGGATTTTGGCCGAATGTTTCTTCCGGACTAGAGGAACGTGTGCCAAAGCCAAGTCATATCGGGATATGTTTGTTCTGCTACACAGTAAATTTTCCAAACAAATCTGCTTACACAATGGCTTACAGAAGAGCCGTAAACCTCATTCCGAAAGGAAAGAACTGTGTCTTTAGTCTGTGGATACCTTGTTTTCAAAAATCACCAAATGTCATCAGGCAAACTGTCAGATTTCATAAACACGCCAATAACTACTGGGGCAGAACTACAAGAAGTCTTCACACTGGTACACCTTTGATGGTGGCCAAGTTACTCTCTGTGGATGAGCTTTTTGCCAAGAGGTCTCTGCAGGAATACCTCAAGAAGATGGAGACAGAGTACAGTGAATATTTGAGAGCAGTCAACAGCAGTGTGACAGAGGAGCAGTACAGTGAGGACGAACTGAGGGTTAAGAGGACCAAAGTGTCCCTGCTGGCTCCTCTTAtccagagcatcagagagctgGACACCAAACAAAAAGAGATGGCTGAGACCGACACACTCCTGAAAGATGAAGACCCAGCCCTGCGAGAACTGGCTGAGCTGGAAAGTGAAGGATGTTTGCAAGATATTCAACATCTTAGACAAAAGATCCTGGATCTGTTGATCCCTGAAGAGGAGGCAGATCTGAGTGACCTTGTCCTGGAAGTTACAGCAGGTGTCGGGGGTCAGGAGGCCATGCTGTTTACTGATGAGGTGTTTGACATGTACCAGGGCTACGCTCAGCACCACGGCTGGTCCTTCGACATCCTGGAGCACATGACCAGCGAAATAGGTCAGTGGACTCACGtccacgccccccccccccccccccccccctgcaaatttttttttttttccccccaccggCCCCTTCAGCGGGTTCCCAGGACTGAAAAACAGAGCAGAATGCACACTAGCACCATGACTGTGGCTGTACTGCCCCAACCCACAGAGATCTCTTTCACTATAAACTCAAAGGACCTGAGGATAGAAACTAAGAGAGCGAGTGGAGCTGGAGgtcaacatgtcaacaccaCAGACAGTGCAGTCAGAATAGTCCATCTGCCTACAgGCGTGGTTGCAGAGTGCCAGCAGGAACGGTCACAGATAAAGAACAAGGAGAAAGCCATGAAGGCTCTGAGAGCAAAACTGTACAGCATGAAGCTAGAGGAGGAGACTAGCAAACGCTACAACCAGCGTAAAATACAGATTGGCACCAAAGGCAGATCAGAGAAGATTCGAACGTACAACTTTGCCCAGGACCGTATAACAGACCACCGTATTGGCATGACGGTGCACGACATTAAGAGCTTCCTGTTGGGAGAGGATCTGCTGGACGAGATGAACTCTGCGCTACAGGAATTCTCCAACCAGGAGATGCTTGCAGAACTGCTGGGAGAAAACAACCAGGACAGCTGATGAATGTGGATCTGACAAATATGGATTGTGATAGAATGGAAACTTCTTGCAACATGTTCTAGCAAAGCATGCTAAACACTGTAATATCGGTAATTCCTACTCCCCTTCAAATTCTGCAAGAAAAACTGAGATAAAGGACTATGATGGATTAAAAGGCTGACCAAGTCTTAATGCTtctgacaaacaaaaaaagtattgcCACTTTAATGTCTGTAGCATGTCCAGTGTGTGACATTGACAGCAATGTCAGCACAAACATAAAAGTGGCTAATAAAATGACCCAACTATGGAGTGATCATAACACATGATCTGTAA

Function

symbol description
mtrf1l Predicted to enable translation release factor activity. Predicted to be involved in mitochondrial translational termination. Predicted to act upstream of or within translational termination. Predicted to be active in mitochondrion. Orthologous to human MTRF1L (mitochondrial translation release factor 1 like).

NR:

description
peptide chain release factor 1-like, mitochondrial

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784931.1 True 2374 mRNA 0.44 8 10551492 10557691

Neighbor

gene id symbol gene type direction distance location
LOC120547519 vip coding upstream 16918 10528200 ~ 10534574 (+)
LOC120547607 NA coding upstream 314548 10221560 ~ 10236944 (+)
zgc:65997 LOC101480976,LOC102212345,LOC100706081,LOC104967569,LOC107089893,LOC105937212 coding upstream 364045 10183096 ~ 10187447 (+)
mrps5 mrps5 coding upstream 427995 10097732 ~ 10123497 (+)
LOC120548339 NA coding upstream 796710 9747308 ~ 9754782 (+)
desi2 desi2,LOC101155051,LOC107089908 coding downstream 870 10558561 ~ 10579945 (+)
kcnh1a kcnh1 coding downstream 35094 10592785 ~ 10632920 (+)
si:dkey-174i8.1 LOC104941281,LOC100697478 coding downstream 123570 10681261 ~ 10691085 (+)
camk2g2 LOC102311605,LOC101480272,LOC100707324,LOC102797899,LOC103476425,LOC103386999,LOC107089901,LOC103137428,LOC106959359 coding downstream 143563 10701254 ~ 10765131 (+)
LOC120548124 pnpt1 coding downstream 290494 10848185 ~ 10859551 (+)
G192821 NA non-coding upstream 195377 10354551 ~ 10356115 (+)
G192771 NA non-coding upstream 312833 10236971 ~ 10238659 (+)
G192773 NA non-coding upstream 321594 10229462 ~ 10229898 (+)
G192772 NA non-coding upstream 322829 10228120 ~ 10228663 (+)
G192755 NA non-coding upstream 418260 10132536 ~ 10133232 (+)
G192900 NA non-coding downstream 209340 10767031 ~ 10768054 (+)
G192940 NA non-coding downstream 380668 10938359 ~ 10996645 (+)
G192942 NA non-coding downstream 401523 10959214 ~ 10962849 (+)
G192945 NA non-coding downstream 460449 11018140 ~ 11018931 (+)
G192997 six3,six3a,LOC104943435,LOC107711438,LOC107733790 non-coding downstream 577389 11135080 ~ 11139366 (+)
G192834 NA other upstream 109407 10441527 ~ 10442085 (+)
LOC120547509 NA other upstream 227732 10314946 ~ 10323760 (+)
LOC120547507 NA other upstream 259203 10264097 ~ 10292289 (+)
pank1a LOC103364766,LOC102792137,LOC100705818,LOC106930799,LOC102312257 other upstream 332221 10193029 ~ 10219271 (+)
arhgef33 arhgef33,LOC107098984 other upstream 878240 9653904 ~ 9673252 (+)
mrpl57 mrpl57 other downstream 29087 10586778 ~ 10591293 (+)
LOC120548129 LOC107375852 other downstream 395362 10953053 ~ 10956622 (+)
G192994 NA other downstream 592628 11150319 ~ 11152241 (+)
prepl prepl,slc3a1 other downstream 799349 11357040 ~ 11368623 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other downstream 1016707 11574398 ~ 11584172 (+)

Expression


Co-expression Network