trnar-ccg_3


Basic Information

Item Value
gene id trnar-ccg_3
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18624726 ~ 18624798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1418
GGCCCAGTGGCCTAATGGATAAGGCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCAAGTCCCACCTGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1418 True 73 tRNA 0.62 1 18624726 18624798

Neighbor

gene id symbol gene type direction distance location
chmp4c chmp4c,LOC107086476,LOC106961905 coding downstream 3762 18617665 ~ 18620964 (-)
LOC120552023 LOC103373088 coding downstream 7327 18613150 ~ 18617399 (-)
esyt2b esyt2 coding downstream 216801 18374720 ~ 18407925 (-)
ncapg2 ncapg2 coding downstream 250700 18359504 ~ 18374026 (-)
ptprn2 ptprn2,LOC102778033 coding downstream 266728 18231466 ~ 18357998 (-)
arl8 arl5b,LOC103373092,LOC100708858,LOC106590131 coding upstream 15459 18640257 ~ 18648625 (-)
cacnb2a cacnb2 coding upstream 34479 18659277 ~ 18728599 (-)
LOC120551919 slc39a12 coding upstream 106726 18731524 ~ 18740086 (-)
mrc1a mrc1 coding upstream 117201 18741999 ~ 18754600 (-)
LOC120551921 tmem236,LOC104961611,LOC102297878 coding upstream 131555 18756353 ~ 18762846 (-)
G220839 zfand1 non-coding downstream 1341 18622691 ~ 18623385 (-)
LOC120552692 NA non-coding downstream 46649 18472125 ~ 18578077 (-)
G220732 dnajb6 non-coding downstream 410337 18207365 ~ 18214389 (-)
G220742 dnajb6 non-coding downstream 423208 18188724 ~ 18201518 (-)
G220695 NA non-coding downstream 521570 18066795 ~ 18103156 (-)
G220860 NA non-coding upstream 115619 18740417 ~ 18740616 (-)
G220888 NA non-coding upstream 191108 18815906 ~ 18816378 (-)
G220893 NA non-coding upstream 204953 18829751 ~ 18829985 (-)
G220972 NA non-coding upstream 415467 19040265 ~ 19043216 (-)
LOC120552156 NA non-coding upstream 691856 19316654 ~ 19317227 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 140950 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 1749426 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 1829602 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 2339991 16266303 ~ 16284735 (-)
G220124 NA other downstream 2559505 16064670 ~ 16065221 (-)
LOC120552352 colec12,LOC102798044 other upstream 148179 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 314115 18938913 ~ 18949495 (-)
G221048 ankh other upstream 690793 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 2210380 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2592882 21217680 ~ 21221667 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ccg-22 NA coding NC_048575.1 CM023229.2 34763488 ~ 34763560 (+)
eurasian perch (Perca fluviatilis) trnag-ucc_39 NA non-coding NC_053133.1 CM020930.1 3202707 ~ 3202778 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ccg_2 NA coding NC_047595.1 CM018541.1 32086477 ~ 32086549 (-)
tiger barb (Puntius tetrazona) trnar-ccg_26 NA misc NC_056706.1 CM032075.1 10540219 ~ 10540291 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_25 NA coding NC_035921.1 CM008324.1 21065169 ~ 21065241 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_2 NA coding NC_035913.1 CM008316.1 13275511 ~ 13275583 (+)