prrg4


Basic Information

Item Value
gene id prrg4
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29310550 ~ 29314709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40938
aagggaggtcTTCGAAAACATCCCGGCTACAGAGGCTTTTTGGAAGAAATATACTGAAGAAAAGGACAATAGCCTCTCACGGGTTGATGTGACCTCTCTTTTGGTGGGACTGATTGCTGGTGGAGTGGCCATTGTTATTGCTGGCCTCCTGGTCTGGTATTTATGTCACGGCAAATGCAAAAACAGGCATGCAAACTCCTCTCACAGGTCCATGCGGGGGCGACCGAATAGGAGTAATGCTTCTTTAATAATGAGACGGCTGGAGGAGGTGTCCTTACAACCTGTACCCCCACTCCCTATGGAGGAAATAGACCCCCCAGGGCTGCCTTCCTATGAGCAGGCAATTGCAAAAAGTGGACCACACGACGCCCCACCTCCTCCCTATCCTGGCTCTCAACCTGGAAGTATTCGGCGGTAGTATCTTCAGGACAACACGTCTGTCAGCATTAAGCAGACAATTTACAACTAACATTTACACTGTGCTGCTCTGCTTAGCATTGTGTACCAATTCTTTCCATCACAACATTTAAAACACTTCCTTATGCCTTCTGTTTATTGCTCTGATTATATTTATCCACtcatacatttaattttttttctggtcTTTTTTTCTTAGCAGTATAATCCCCCATCTTAATGTGCTTGTGCCAAAACAGTTTTGTGGTAGCCTCTACTAACTATTTTCCCAGGTCTGATTGTGCTTTGTAATATAATTGTAAATCTGTGAAGAATAAGCTTTATAATACATGTTACCCAGTTTGCTGCTTTTTGTCTAAATGGAAATGAAGAATCAATAATATGTTGGACATGAGATATTTAAGTTGCTGGAGTACTAAGGCCCCTAAGGAGCTGTTTCTTTAGATGCAGCATGCATAGAGGAGCTTATAGCAAGGGGCATTATAATTATATGTCATTACAAAATAAGTATTTATTGCAATTAAAAAGAGACACTGATTTGTGTAGTTATACAGATTCCTGTCTCCTTCAGAAGGAAAAGTAGTTCCAGCCAAACTGATTTCAGTAGCGTGATGGTATTCTATTGCCataaagaaaatgcttttaAGGATAATACAAGTATTTTTGATGTACTGGTCTACCAGCTTGCTTTGTAAACACTTTGTACTTTCAGCTGTATATTatcttttaccttttttaattgttattaaatgTGATGGTTTATTAGCTTCTAGTGTGGGAATGCTCttctaaaatgtgaagtaatttaaactttttaataTATACATGTGGTTAATTATAAAATGTACATTACTATAAATAGATGGAGGTGGGAGCTCTTCAAAGGCAGTTTtacaatattttacatttaaacacGGATATTTTACAATTGTACAAGAAAATGATAGATGTGATGAATATTACAGCTAAAATGTATTTCAACAGTTGTAAAACATTTGTCCAACATTTCAATAGTCACTTACTTAACTGTAATTTAAAGTCACTTACTTAACTGTAATTTAAAGTCACTCACTTAACTGCAATTTGATAGCCTGGCATTGCCAGACTAAATTCGCAAATGCGTATCTGCCAGCGCAAATCAAACATGAGCTCTCAGATTCGTCTGGTTTCTAGGCAAGTGATTTGAATGAGCATTTTGCAAGCTGGTTGGATGCTGGTGTCTCATTCTCATTAGATGATGCAGAAACCAACACGGCAATATGTGACGAATAGGGATGAGACTGTGTCGCAGAAACATAAGGGTTGAGAAGGCATTATGTCCCTGTAAATTATCAATAACAAAGTTTCATCATGACATTATGATAATTTATTTAGGAGTCACTTTGTTGAAGCTGATCTGAACCATAA
>TU40940
TTTAGGCGGAGCAGAGGCTACCTCGGTTGGGAGTAAACAAAACCTTTTTAACCTACCGGGAACTGTCTGGAGTTGCTCAGCGACTAGCGCTGCTATAATTCATTGTACTTTACCTATACACGTCACGATGAGCCGAGTTACATTTTTTCAAAGGAAGTTGCTAAACTCGGCTGTTGTTTGTGACTATCGCTAAACGTTTCCTGGTTCATCTTATCAGCGTCGAGGCAAGtaacctacctacctacctacctgctCTTTTAGGTTTCATTTTGTTTCGGCGTTCAAGACACTTATCATCATAGGTAGCCTAAAGTAGAAGTAGTCTACCTGGTGCCAGTTGGGGAAAGAAAGGTACATACATAGGATATATAGTAGGCTAGTTTGAAGAAGCTGGGTGTGCTGTTGATGGTACTCTGCCCTCTGTAGCCAATTAGTGCCCCACCCGCTCTCCTCGCGCAGGTGCACGCCTGACCATGTTGTTTCATCTGTTCATACTCCTTCAACTCCTGGCATGTGGAGATCTGGCCTGTATGAGGAGGTTACTGTCGGAACATGAAGACCAAGAAGTGTTTTTAGATGATGGagg
>TU40941
TTTAGGCGGAGCAGAGGCTACCTCGGTTGGGAGTAAACAAAACCTTTTTAACCTACCGGGAACTGTCTGGAGTTGCTCAGCGACTAGCGCTGCTATAATTCATTGTACTTTACCTATACACGTCACGATGAGCCGAGTTACATTTTTTCAAAGGAAGTTGCTAAACTCGGCTGTTGTTTGTGACTATCGCTAAACGTTTCCTGGTTCATCTTATCAGCGTCGAGGTGCACGCCTGACCATGTTGTTTCATCTGTTCATACTCCTTCAACTCCTGGCATGTGGAGATCTGGCCTGTATGAGGAGGTTACTGTCGGAACATGAAGACCAAGAAGTGTTTTTAGATGATGGagg
>TU40942
TTTAGGCGGAGCAGAGGCTACCTCGGTTGGGAGTAAACAAAACCTTTTTAACCTACCGGGAACTGTCTGGAGTTGCTCAGCGACTAGCGCTGCTATAATTCATTGTACTTTACCTATACACGTCACGATGAGCCGAGTTACATTTTTTCAAAGGAAGTTGCTAAACTCGGCTGTTGTTTGTGACTATCGCTAAACGTTTCCTGGTTCATCTTATCAGCGTCGAGCCAATTAGTGCCCCACCCGCTCTCCTCGCGCAGGTGCACGCCTGACCATGTTGTTTCATCTGTTCATACTCCTTCAACTCCTGGCATGTGGAGATCTGGCCTGTATGAGGAGGTTACTGTCGGAACATGAAGACCAAGAAGTGTTTTTAGATGATGGagg
>XM_039796141.1
CTTTTATTTACGTATCATGTTATCCAGGTAAACGTGATCGATTGGTTGCGTCTGCTCAGGTAGTTTAGGCGGAGCAGAGGCTACCTCGGTTGGGAGTAAACAAAACCTTTTTAACCTACCGGGAACTGTCTGGAGTTGCTCAGCGACTAGCGCTGCTATAATTCATTGTACTTTACCTATACACGTCACGATGAGCCGAGTTACATTTTTTCAAAGGAAGTTGCTAAACTCGGCTGTTGTTTGTGACTATCGCTAAACGTTTCCTGGTTCATCTTATCAGCGTCGAGGCAAGtaacctacctacctacctacctgctCTTTTAGGTTTCATTTTGTTTCGGCGTTCAAGACACTTATCATCATAGGTAGCCTAAAGTAGAAGTAGTCTACCTGGTGCCAGTTGGGGAAAGAAAGGTACATACATAGGATATATAGTAGGCTAGTTTGAAGAAGCTGGGTGTGCTGTTGATGGTACTCTGCCCTCTGTAGCCAATTAGTGCCCCACCCGCTCTCCTCGCGCAGGTGCACGCCTGACCATGTTGTTTCATCTGTTCATACTCCTTCAACTCCTGGCATGTGGAGATCTGGCCTGTATGAGGAGGTTACTGTCGGAACATGAAGACCAAGAAGTGTTTTTAGATGATGGagaaaaaaaaagggaggtcTTCGAAAACATCCCGGCTACAGAGGCTTTTTGGAAGAAATATACTGAAGAAAAGGACAATAGCCTCTCACGGGTTGATGTGACCTCTCTTTTGGTGGGACTGATTGCTGGTGGAGTGGCCATTGTTATTGCTGGCCTCCTGGTCTGGTATTTATGTCACGGCAAATGCAAAAACAGGCATGCAAACTCCTCTCACAGGTCCATGCGGGGGCGACCGAATAGGAGTAATGCTTCTTTAATAATGAGACGGCTGGAGGAGGTGTCCTTACAACCTGTACCCCCACTCCCTATGGAGGAAATAGACCCCCCAGGGCTGCCTTCCTATGAGCAGGCAATTGCAAAAAGTGGACCACACGACGCCCCACCTCCTCCCTATCCTGGCTCTCAACCTGGAAGTATTCGGCGGTAGTATCTTCAGGACAACACGTCTGTCAGCATTAAGCAGACAATTTACAACTAACATTTACACTGTGCTGCTCTGCTTAGCATTGTGTACCAATTCTTTCCATCACAACATTTAAAACACTTCCTTATGCCTTCTGTTTATTGCTCTGATTATATTTATCCACtcatacatttaattttttttctggtcTTTTTTTCTTAGCAGTATAATCCCCCATCTTAATGTGCTTGTGCCAAAACAGTTTTGTGGTAGCCTCTACTAACTATTTTCCCAGGTCTGATTGTGCTTTGTAATATAATTGTAAATCTGTGAAGAATAAGCTTTATAATACATGTTACCCAGTTTGCTGCTTTTTGTCTAAATGGAAATGAAGAATCAATAATATGTTGGACATGAGATATTTAAGTTGCTGGAGTACTAAGGCCCCTAAGGAGCTGTTTCTTTAGATGCAGCATGCATAGAGGAGCTTATAGCAAGGGGCATTATAATTATATGTCATTACAAAATAAGTATTTATTGCAATTAAAAAGAGACACTGATTTGTGTAGTTATACAGATTCCTGTCTCCTTCAGAAGGAAAAGTAGTTCCAGCCAAACTGATTTCAGTAGCGTGATGGTATTCTATTGCCataaagaaaatgcttttaAGGATAATACAAGTATTTTTGATGTACTGGTCTACCAGCTTGCTTTGTAAACACTTTGTACTTTCAGCTGTATATTatcttttaccttttttaattgttattaaatgTGATGGTTTATTA

Function

NR:

description
PREDICTED: transmembrane gamma-carboxyglutamic acid protein 4

GO: NA

KEGG:

id description
ko00600 Sphingolipid metabolism
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU40938 False 1824 lncRNA 0.38 5 29310550 29313809
TU40940 False 586 lncRNA 0.46 2 29313958 29314646
TU40941 False 351 lncRNA 0.46 3 29313958 29314646
TU40942 False 384 lncRNA 0.48 3 29313958 29314646
XM_039796141.1 True 1837 mRNA 0.42 7 29311192 29314709

Neighbor

gene id symbol gene type direction distance location
qser1 qser1 coding downstream 551 29299355 ~ 29309999 (-)
depdc7a depdc7 coding downstream 15869 29284306 ~ 29294681 (-)
kiaa1549lb kiaa1549l coding downstream 93818 29154972 ~ 29216732 (-)
LOC120555430 galnt8,LOC103358106 coding downstream 174489 29126788 ~ 29136061 (-)
spon1a spon1 coding downstream 245993 28985561 ~ 29064557 (-)
eif3m eif3m coding upstream 3380 29318089 ~ 29326464 (-)
rcn1 rcn1,LOC102786392 coding upstream 37539 29352248 ~ 29375600 (-)
LOC120555582 LOC106964557,LOC103462855,LOC102220269,LOC103136529 coding upstream 208049 29522758 ~ 29538735 (-)
rnaset2 rnaset2,LOC103368766,LOC104927783 coding upstream 226898 29541607 ~ 29552473 (-)
ddx21 ddx21,LOC102783051 coding upstream 852109 30166818 ~ 30178614 (-)
G30759 NA non-coding downstream 169912 29140354 ~ 29140638 (-)
G30691 NA non-coding downstream 641586 28668598 ~ 28668964 (-)
G30644 NA non-coding downstream 918032 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 1085103 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 1272343 28037134 ~ 28038207 (-)
G30852 pax6 non-coding upstream 72048 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 300731 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 346959 29661668 ~ 29662088 (-)
G30969 NA non-coding upstream 847771 30162480 ~ 30288433 (-)
G31013 hk1,LOC101156878,LOC107381906,LOC106513162,LOC102780719 non-coding upstream 1028707 30343416 ~ 30343902 (-)
LOC120555471 hipk3 other downstream 41367 29217853 ~ 29269183 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other downstream 463585 28770001 ~ 28846965 (-)
G30693 NA other downstream 640682 28669191 ~ 28669868 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other downstream 760550 28447956 ~ 28550000 (-)
dbndd1 dbndd1,LOC103136566 other downstream 1237071 28046759 ~ 28073479 (-)
elp4 elp4,LOC103373817 other upstream 87326 29402035 ~ 29461236 (-)
LOC120556497 csmd1,LOC102783723 other upstream 302611 29617320 ~ 29965747 (-)
fam120b fam120b,LOC104944276 other upstream 1200546 30515255 ~ 30532142 (-)
cdc42se2 cdc42se2,LOC103398548 other upstream 2793863 32108572 ~ 32117250 (-)
G31602 ddx28,LOC106597432 other upstream 3576790 32891499 ~ 32894405 (-)

Expression


Co-expression Network