rnaset2 (rnaset2,LOC103368766,LOC104927783)


Basic Information

Item Value
gene id rnaset2
gene name rnaset2,LOC103368766,LOC104927783
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29541607 ~ 29552473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794374.1
TTAATTGACAAATCTATTATCTTCTTTAAGGTCAGACATGAGGCTCTGCTTCCTTATTCTGCTCTGCCTGGCAGCAGCCCTGTCATCCGCCTTTGTGATTTCACCTCCacacatgtggaccaaactgatCCTGACCCACCACTGGCCCACCACCTTCTGTAGTATGGAACACCCAGCATGTCATCCCAACATTAGCTACTGGACACTACATGGACtctgGCCAGATAAAGGGATTGACTGCAATTCATCGTGGCATTTCAACTCTTCTCAAATAGAGGACCTGCTTCCAGACATGAAGACGAGTTGGCCTGACTTGCTTAACCCCTTGTCTGCTTCTTTCTGGAAGTATGAGTGGCACAAACATGGTACATGTGCAGCCAAAGCACCTTCTCTGAATAGTCAACATAAATACTTCAGTAAGGCACTGGAACTATACCataaagtggatttggacagCATCCTGAAGAAGTTTGACATCACCCCTTCAGAAAAATACTACAAGCTTTCACAAATTGAAGGAGTCATAGAGAACTTCTACAGCGTCAAACCTAAGATCCAATGTGTCCATCCATCAAAGAATGCTGATTTCCAGATTTTGGGGCAGATTGAGATCTGTTTCAACCCCGACTTCACCCTCCTGGACTGTGAGAAACAGTTTACAATGGAGACAACATCTAAGGGAGACTGGGACAATCCCGTTGCGGTTGACAAGGCATCTGGGTTCAGTGTGTGTGACCATGATATGCCAGTTTACTACCCACCTCTTCCATAAAACGCATACATGTGCAAACTGAAACGCAGAAGCGCACTACGACCttacttatacacacacaaagaaaacatacaaacaaattAACTGTACTGTGATTTAACATGTGCGCACATACTGACAAACTATAATTCTATTTTTCTCAGGCTTCACAATGAACATCATAACTGCAATGATAATGTATGTCAAAAATACCCTTACACAATCTGTGCagtctgaaaacattttttaactgCATTGAAATTCTGTCTGTGACAGGTACTTGAAAAAGATCTCCTGTGCAAGGTTATTTTTATATCCTACAAAAACCAGGACACACACTCAACCACTACTTAGTGCTTTAATGGAATTATGTCCCTTCCTGACCCTCACTATTAGATGAATCCGATATAGAGCACagcatgtttcttttttcttcagcTCAGGTCAGGTCAGGTCAGGCTGGCGGGCCGGCAGATGGACACTTTGTACATTGTTGGCAAATGAGTGGAGCCTTACGTCAGATTTGCAGGTGACTCTTACTTAATGTTATTGGTTGTGTAGATGTCAAAACATATATTGTGACAGCTGGCCATATTTTATACCACATTTACGTGCCACCTATTAAGTGCCATCTCTTTTTTTGCGGGGTGATCATATTTTTCCTTATTAAATAAATGCTTCTTCCACATTATAA

Function

symbol description
rnaset2 Predicted to enable endoribonuclease activity. Acts upstream of or within rRNA catabolic process. Predicted to be located in endoplasmic reticulum lumen and lysosomal lumen. Predicted to be active in extracellular region. Is expressed in several structures, including blastomere; digestive system; gonad; immature eye; and yolk. Orthologous to human RNASET2 (ribonuclease T2).

NR:

description
PREDICTED: ribonuclease T2-like

GO:

id name namespace
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0033897 ribonuclease T2 activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01166 RNASET2; ribonuclease T2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794374.1 True 1445 mRNA 0.42 9 29541607 29552473

Neighbor

gene id symbol gene type direction distance location
LOC120555582 LOC106964557,LOC103462855,LOC102220269,LOC103136529 coding downstream 2872 29522758 ~ 29538735 (-)
rcn1 rcn1,LOC102786392 coding downstream 166007 29352248 ~ 29375600 (-)
eif3m eif3m coding downstream 215143 29318089 ~ 29326464 (-)
qser1 qser1 coding downstream 231608 29299355 ~ 29309999 (-)
depdc7a depdc7 coding downstream 246926 29284306 ~ 29294681 (-)
ddx21 ddx21,LOC102783051 coding upstream 614345 30166818 ~ 30178614 (-)
tacr2 tacr2,LOC103373147 coding upstream 800955 30353428 ~ 30361232 (-)
LOC120556252 pbld coding upstream 889774 30442247 ~ 30446660 (-)
rufy2 rufy2,LOC102778539 coding upstream 904767 30457240 ~ 30487984 (-)
LOC120556254 LOC104944274 coding upstream 936850 30489323 ~ 30491474 (-)
G30852 pax6 non-coding downstream 144924 29386757 ~ 29396683 (-)
G30759 NA non-coding downstream 400969 29140354 ~ 29140638 (-)
G30691 NA non-coding downstream 872643 28668598 ~ 28668964 (-)
G30644 NA non-coding downstream 1149089 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 1316160 28225093 ~ 28225447 (-)
G30898 NA non-coding upstream 62967 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 109195 29661668 ~ 29662088 (-)
G30969 NA non-coding upstream 610007 30162480 ~ 30288433 (-)
G31013 hk1,LOC101156878,LOC107381906,LOC106513162,LOC102780719 non-coding upstream 790943 30343416 ~ 30343902 (-)
G31024 NA non-coding upstream 855632 30408105 ~ 30410056 (-)
elp4 elp4,LOC103373817 other downstream 80371 29402035 ~ 29461236 (-)
prrg4 NA other downstream 226898 29310550 ~ 29314709 (-)
LOC120555471 hipk3 other downstream 272424 29217853 ~ 29269183 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other downstream 694642 28770001 ~ 28846965 (-)
G30693 NA other downstream 871739 28669191 ~ 28669868 (-)
LOC120556497 csmd1,LOC102783723 other upstream 64847 29617320 ~ 29965747 (-)
fam120b fam120b,LOC104944276 other upstream 962782 30515255 ~ 30532142 (-)
cdc42se2 cdc42se2,LOC103398548 other upstream 2556099 32108572 ~ 32117250 (-)
G31602 ddx28,LOC106597432 other upstream 3339026 32891499 ~ 32894405 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other upstream 3789774 33342247 ~ 33353448 (-)

Expression


Co-expression Network