rcn1 (rcn1,LOC102786392)


Basic Information

Item Value
gene id rcn1
gene name rcn1,LOC102786392
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29352248 ~ 29375600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794528.1
CACTGTGATTGGCTGTACGTAAGGCGGCAGAAAATCCCTGTTTGGTTGCATCCCTCCCTCAGGAAATAGGGCGCAAGTTCTCAAAGGGGGACAGGATTGCCTAAAACCGTTTGAGTGAGGACTGGAGGTATTCTCAGTGGACCTGTCTGCAGCCTCAGGTCCTCTCTGCAGGTTTGGTTATTGCGCAGCTGCAACATTGTTGCACACATCGTtgctgaagacaggaaaagaAAAGTTAGTGTGTGTCGGTCGATACAAGCAGTGAAAGTGGCTACACCGCCGGTTGCTTATTGTGAATTGTAGTGTCACAGGCCTGTTTACAACTAAGAACCTCCATCTTCATCTCTGACTGATGGACGTCTTCTCCTTCGTGTATGCTGCGCTTCTGTGCACTGTTGTGGTGCACGGTAAGCCAACGTTAAGGAAAGAGAGAGTTCTTCATGACCCAGAACTGGGAAGGCCTGCCCACGAAGACAATAAAAGCTTCCAATACGACCATGAGGCCTTTCTTGGCAAAGAGGAGGCCAGAACATTTGACCAACTCACCCCCGAGGAGAGCAAAGACAGGCTCAGtaaaatagtGGATCGGATAGACGGCAACGTTGATGGCTACATCACCACAGCCGAACTCAAGGCTTGGATAAAACGTGTACAGAAGCGTTACGTTTATGAGAATGTGGCAAAGGTGTGGACAGATTATGACCTGAACAAAGACAACAAGATTTCGTGGGATGAGTACAAGCAAGCCACATACGGATACTACCTCGCCAACCCGGAGGAGTTTGATGAAGCAACAGACCAGTTCAGCTTCAAGAAGATGCTCCCTCGTGATGAGAGGAGGTTTAAAACAGCTGATCTGAACGGGGACCTTGCAGCAGACAGAGAAGAGTTTACATCCTTCCTCCACCCTGAGGAATTTGAACACATGAGGGATATTGTGGTTCTGGAAACCCTGGAGGACATTGACAAGAACGGCGACGGACACGTGGATGAAGATGAGTATATTGCCGACATGTTTGCTCATGAGGACGGGGGTCCGGAGCCGGACTGGGTCAAGACCGAGAGGGAACAGTTCTCTGACTTCCGAGACCTGAACAAAGATGGTAAAATGGACCAGGACGAAATCCGCCACTGGATTATGCCACAAGACTACGACCATGCGCAAGCTGAGGCAAGACATCTGGTGTATGAGTCTGACCAGGACAAGGACCAGATGCTGACCAAAGAGGAGATCCTTGGAAACTGGAACATGTTTGTGGGAAGCCAGGCCACCAACTACGGAGAGGACCTCACCAAGAACCATGACGAGCTCTGAGATCTCAGCGCAGTTTCTGACGCATACGTGAGGAGGGTTGGTGAAGATCTTTGTCTTCAGAGGCAGAATCGGACTCTTGCACCTCCTCCCACCACCGGAACCACCGCTCCATCCTTTCCTTGTTACGTTGGGACAGATAGTGTGTTGGATTGTAAAACCATCACTATAGATACCAAACGAGGAGGGATAAGGGTCGGTCCTACCACTAACACTAACGGTCCATCTCGGTTTTATAGCGACGGTTCTGTTTCTGACATTCAGGAGCAAAGCCAGATCCAGTGGACTTACTTTCCGACGGTGCCTTCCTGCCGCATCGTCGGCTTCACTGCCACAGAGATCTGTGTGGATAGTTTTAAAAACCTGTCAAAGCTGAATGCCGAGCTTTAGGTGAATTGTCAGATACAGGAACAGTTTTTGATTGCCATGTTAATGTGAAACTACAAcagattatatttatttatcaaatcTCTTCTCCGATCTAGGTTTGAGAGGAATACAGTGTTCAACTAGAGATCGTTTTCGTTCACAAATgatgtttctttatttacagtttTCCTGACCATATGACTTTAATGATTTGTTGTTCTTTTGATTAGCTAAGTGCTTTTAAGAACTGTTCATTAACTGATGTTTAATGGCATGGTATTTGCACCCGTTTGGTTTTAGTGTAGCCTGTAAAAGATTTATTTTCTTCATACTTAGTTTGAGTTGTATTTATTGACATACTTCAGGCCATCAGTGTGCTCCATGTTAGATTTGTATAGACCTTTGCTGACTTTTGAGCTTTACCTTTTTACAGCTGTCTAATTTAattaaggttgtttttttgaggATTGTATTGGTTTAAATGCGTAACTTCACATGACTCCTTGCTTCCTGTTACTCCTTGCTTCCTGTTACATCACTTCAGGGTCATCTTTTTGTATCAGATGTACCaaatgtatttccacatttttttgtattgtttaatggATAGTTTGTATGACCGGTGCATAGAACTATGCAACTTGTGAAAAGATCAAACTAGGGCCAGAATTTGTAATGGTAGTCACATTAATGTCactcaaaacttatttttttttttttatcctttttgtatttttccattgtgttttgttgtccCAAACCTCAGATGCATTAATAGTCCACATCATCAAAAAACATGTCAACCTATCTCCTTTTTCACACTGCAGATTCTAATGAactatgtaaaaataaaaaataaaaatgtattgtg
>XM_039794529.1
TTGTTTACTGCCGCTGTAGCAGACAGAGAAAAATGTCCAGGGGACCGAGCACGTTACCAGAAAGCAGAGGGTGCACGCAGAGTTGATGCTGCGTTCAAAGGGGGCATTTCATCCATCTTAATTAGGATTAATTGCAATGGAGACGAGGAGGGTCGGAGAGGCCAGAGCACCTGCTGCAGGAGGAGCAGCGAGAGGATCCGAGGAGGAGAGtaaaatagtGGATCGGATAGACGGCAACGTTGATGGCTACATCACCACAGCCGAACTCAAGGCTTGGATAAAACGTGTACAGAAGCGTTACGTTTATGAGAATGTGGCAAAGGTGTGGACAGATTATGACCTGAACAAAGACAACAAGATTTCGTGGGATGAGTACAAGCAAGCCACATACGGATACTACCTCGCCAACCCGGAGGAGTTTGATGAAGCAACAGACCAGTTCAGCTTCAAGAAGATGCTCCCTCGTGATGAGAGGAGGTTTAAAACAGCTGATCTGAACGGGGACCTTGCAGCAGACAGAGAAGAGTTTACATCCTTCCTCCACCCTGAGGAATTTGAACACATGAGGGATATTGTGGTTCTGGAAACCCTGGAGGACATTGACAAGAACGGCGACGGACACGTGGATGAAGATGAGTATATTGCCGACATGTTTGCTCATGAGGACGGGGGTCCGGAGCCGGACTGGGTCAAGACCGAGAGGGAACAGTTCTCTGACTTCCGAGACCTGAACAAAGATGGTAAAATGGACCAGGACGAAATCCGCCACTGGATTATGCCACAAGACTACGACCATGCGCAAGCTGAGGCAAGACATCTGGTGTATGAGTCTGACCAGGACAAGGACCAGATGCTGACCAAAGAGGAGATCCTTGGAAACTGGAACATGTTTGTGGGAAGCCAGGCCACCAACTACGGAGAGGACCTCACCAAGAACCATGACGAGCTCTGAGATCTCAGCGCAGTTTCTGACGCATACGTGAGGAGGGTTGGTGAAGATCTTTGTCTTCAGAGGCAGAATCGGACTCTTGCACCTCCTCCCACCACCGGAACCACCGCTCCATCCTTTCCTTGTTACGTTGGGACAGATAGTGTGTTGGATTGTAAAACCATCACTATAGATACCAAACGAGGAGGGATAAGGGTCGGTCCTACCACTAACACTAACGGTCCATCTCGGTTTTATAGCGACGGTTCTGTTTCTGACATTCAGGAGCAAAGCCAGATCCAGTGGACTTACTTTCCGACGGTGCCTTCCTGCCGCATCGTCGGCTTCACTGCCACAGAGATCTGTGTGGATAGTTTTAAAAACCTGTCAAAGCTGAATGCCGAGCTTTAGGTGAATTGTCAGATACAGGAACAGTTTTTGATTGCCATGTTAATGTGAAACTACAAcagattatatttatttatcaaatcTCTTCTCCGATCTAGGTTTGAGAGGAATACAGTGTTCAACTAGAGATCGTTTTCGTTCACAAATgatgtttctttatttacagtttTCCTGACCATATGACTTTAATGATTTGTTGTTCTTTTGATTAGCTAAGTGCTTTTAAGAACTGTTCATTAACTGATGTTTAATGGCATGGTATTTGCACCCGTTTGGTTTTAGTGTAGCCTGTAAAAGATTTATTTTCTTCATACTTAGTTTGAGTTGTATTTATTGACATACTTCAGGCCATCAGTGTGCTCCATGTTAGATTTGTATAGACCTTTGCTGACTTTTGAGCTTTACCTTTTTACAGCTGTCTAATTTAattaaggttgtttttttgaggATTGTATTGGTTTAAATGCGTAACTTCACATGACTCCTTGCTTCCTGTTACTCCTTGCTTCCTGTTACATCACTTCAGGGTCATCTTTTTGTATCAGATGTACCaaatgtatttccacatttttttgtattgtttaatggATAGTTTGTATGACCGGTGCATAGAACTATGCAACTTGTGAAAAGATCAAACTAGGGCCAGAATTTGTAATGGTAGTCACATTAATGTCactcaaaacttatttttttttttttatcctttttgtatttttccattgtgttttgttgtccCAAACCTCAGATGCATTAATAGTCCACATCATCAAAAAACATGTCAACCTATCTCCTTTTTCACACTGCAGATTCTAATGAactatgtaaaaataaaaaataaaaatgtattgtgta

Function

symbol description
rcn1 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axial mesoderm; chordo neural hinge; epidermis; head; and pectoral fin. Orthologous to human RCN1 (reticulocalbin 1).

NR:

description
PREDICTED: reticulocalbin-1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23898 RCN1; reticulocalbin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794528.1 True 2552 mRNA 0.44 6 29352250 29358945
XM_039794529.1 False 2191 mRNA 0.43 7 29352248 29375600

Neighbor

gene id symbol gene type direction distance location
eif3m eif3m coding downstream 25784 29318089 ~ 29326464 (-)
qser1 qser1 coding downstream 42249 29299355 ~ 29309999 (-)
depdc7a depdc7 coding downstream 57567 29284306 ~ 29294681 (-)
kiaa1549lb kiaa1549l coding downstream 135516 29154972 ~ 29216732 (-)
LOC120555430 galnt8,LOC103358106 coding downstream 216187 29126788 ~ 29136061 (-)
LOC120555582 LOC106964557,LOC103462855,LOC102220269,LOC103136529 coding upstream 147158 29522758 ~ 29538735 (-)
rnaset2 rnaset2,LOC103368766,LOC104927783 coding upstream 166007 29541607 ~ 29552473 (-)
ddx21 ddx21,LOC102783051 coding upstream 791218 30166818 ~ 30178614 (-)
tacr2 tacr2,LOC103373147 coding upstream 977828 30353428 ~ 30361232 (-)
LOC120556252 pbld coding upstream 1066647 30442247 ~ 30446660 (-)
G30759 NA non-coding downstream 211610 29140354 ~ 29140638 (-)
G30691 NA non-coding downstream 683284 28668598 ~ 28668964 (-)
G30644 NA non-coding downstream 959730 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 1126801 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 1314041 28037134 ~ 28038207 (-)
G30852 pax6 non-coding upstream 11157 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 239840 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 286068 29661668 ~ 29662088 (-)
G30969 NA non-coding upstream 786880 30162480 ~ 30288433 (-)
G31013 hk1,LOC101156878,LOC107381906,LOC106513162,LOC102780719 non-coding upstream 967816 30343416 ~ 30343902 (-)
prrg4 NA other downstream 37539 29310550 ~ 29314709 (-)
LOC120555471 hipk3 other downstream 83065 29217853 ~ 29269183 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other downstream 505283 28770001 ~ 28846965 (-)
G30693 NA other downstream 682380 28669191 ~ 28669868 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other downstream 802248 28447956 ~ 28550000 (-)
elp4 elp4,LOC103373817 other upstream 26435 29402035 ~ 29461236 (-)
LOC120556497 csmd1,LOC102783723 other upstream 241720 29617320 ~ 29965747 (-)
fam120b fam120b,LOC104944276 other upstream 1139655 30515255 ~ 30532142 (-)
cdc42se2 cdc42se2,LOC103398548 other upstream 2732972 32108572 ~ 32117250 (-)
G31602 ddx28,LOC106597432 other upstream 3515899 32891499 ~ 32894405 (-)

Expression


Co-expression Network