LOC120556764


Basic Information

Item Value
gene id LOC120556764
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 32909188 ~ 32911875 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU58012
GTTATTTTATTAACCCAACCACTGGGTTGAGGCTGTTTAACCCTGTATTATGTATATTCAACCCATATTGGGTTACTTTCAGTAACCCAGTAGCTGGGTTAATGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGGTCATTTTAACCCAGTGGTTTGGTTACATTCAAGTTTGGGTTCCTCCTCCAacggtctttttcttttctccgaGGCGGGAGACCACTCATGGAAACACTGAAGCGATTAAATATAGAGGACTTTGTTAAACTAAAGTTAACAGAACAGCAACTTCTGGAGCTGATGACACTTTTGCAGgCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAAGCCTGACCTGCAGTCTTCAGGATGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGACCAGACCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCGCCCTGGAGCACGACAGCGTTGTCCAAGCTGTACATgtttgtgtcaaatgtttttatgtgtttgatATCAATTTCCCAAAGCAGTGTTTTCTCTGCTTAGCAGTTCCTCCAGAAagaatggggggggggtggtagTAATGTGGCCCCATGCATTTGTTTTTTGGAAATGCTCATGCGATAAgggaattctctctctctctgtctctctctaatatTTAGGAGGAATATTAGGAGGAAATgaattattgttaattgttgCTTGGTATTAGTCCAGTTATTTGATACTCATTTTGAAATGAGGTAGGGGTAATGTGGCCCCATGCATTTCTTCTTTGGAAACGCTCATGTGATAAGGGAATTGGACTTGTTATTGTTATTCCAGTTTTTCTCTTTAAATgagtaaattaaatattgttCAATAAAATCAGTGAC
>XR_005638889.1
tgtacaCTCTTAAAAATACTGGGTTATTTTATTAACCCAACCACTGGGTTGAGGCTGTTTAACCCTGTATTATGTATATTCAACCCATATTGGGTTACTTTCAGTAACCCAGTAGCTGGGTTAATGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGGTCATTTTAACCCAGTGGTTTGGTTACATTCAAGTTTGGGTTCCTCCTCCAacggtctttttcttttctccgaGGCGGGAGACCACTCATGGAAACACTGAAGCGATTAAATATAGAGGACTTTGTTAAACTAAAGTTAACAGAACAGCAACTTCTGGAGCTGATGACACTTTTGCAGgCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAAGCCTGACCTGCAGTCTTCAGGATGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGACCAGACCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCGCCCTGGAGCACGACAGCGTTGTCCAAGCTGTACATgtttgtgtcaaatgtttttatgtgtttgatATCAATTTCCCAAAGCAGTGTTTTCTCTGCTTAGCAGTTCCTCCAGAAagaatggggggggggtggtagTAATGTGGCCCCATGCATTTGTTTTTTGGAAATGCTCATGCGATAAgggaattctctctctctctgtctctctctaatatTTAGGAGGAATATTAGGAGGAAATgaattattgttaattgttgCTTGGTATTAGTCCAGTTATTTGATACTCATTTTGAAATGAGGTAGGGGTAATGTGGCCCCATGCATTTCTTCTTTGGAAACGCTCATGTGATAAGGGAATTGGACTTGTTATTGTTATTCCAGTTTTTCTCTTTAAATgagtaaattaaatattgttCAATAAAATCAGTGACATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58012 False 985 lncRNA 0.44 4 32909210 32911870
XR_005638889.1 True 1012 lncRNA 0.43 4 32909188 32911875

Neighbor

gene id symbol gene type direction distance location
psmf1 psmf1 coding upstream 74697 32819970 ~ 32834491 (+)
ripor3 LOC100693168,LOC104944097 coding upstream 178435 32647599 ~ 32730753 (+)
rspo4 LOC103374720,LOC103367962 coding upstream 464864 32380682 ~ 32444324 (+)
zgc:171566 ggh,LOC108243634,LOC102781709,LOC100692082,LOC107384984 coding upstream 1491696 31377980 ~ 31417492 (+)
LOC120558103 slc6a6,LOC103364884 coding upstream 2035682 30821681 ~ 30873506 (+)
cand2 LOC100694792,LOC102304752,LOC101484714,LOC108244949 coding downstream 90228 33002103 ~ 33033297 (+)
LOC120557808 NA coding downstream 434916 33346791 ~ 33348566 (+)
LOC120557835 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC101485372,LOC102204254,LOC103381127 coding downstream 439493 33351368 ~ 33351936 (+)
LOC120557839 LOC107671222,LOC106963510,LOC107723971 coding downstream 441531 33353406 ~ 33353823 (+)
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding downstream 523652 33435527 ~ 33436108 (+)
G43174 NA non-coding upstream 33574 32873143 ~ 32875614 (+)
G43135 NA non-coding upstream 58568 32850393 ~ 32850620 (+)
G43132 NA non-coding upstream 61282 32847551 ~ 32847906 (+)
G43131 NA non-coding upstream 65982 32839749 ~ 32843206 (+)
G43111 NA non-coding upstream 139586 32769256 ~ 32769602 (+)
G43195 LOC104931984,LOC102207393,LOC107384966,LOC102780474 non-coding downstream 50376 32962251 ~ 32966282 (+)
LOC120557802 NA non-coding downstream 131233 33043108 ~ 33055383 (+)
G43330 NA non-coding downstream 426087 33337962 ~ 33338248 (+)
G43356 NA non-coding downstream 476306 33388181 ~ 33423815 (+)
G43395 NA non-coding downstream 607988 33519863 ~ 33520069 (+)
G43051 LOC102201960 other upstream 437583 32470795 ~ 32471605 (+)
G43045 NA other upstream 448325 32460132 ~ 32460863 (+)
ergic3 ergic3,LOC102788871 other upstream 2773354 30109535 ~ 30135834 (+)
G42449 NA other upstream 3666935 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 5085928 27670963 ~ 27823260 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 126059 33037934 ~ 33041311 (+)
G43277 NA other downstream 275863 33187738 ~ 33212318 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other downstream 350320 33262195 ~ 33336767 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other downstream 428409 33340284 ~ 33345806 (+)
G43656 NA other downstream 1753361 34665236 ~ 34667182 (+)

Expression


Co-expression Network