G43452


Basic Information

Item Value
gene id G43452
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33867580 ~ 33868547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU58348
CCTGGCACAGTGGATGCATTTAATGGTCGGACATAGAAAAATAAACCACAACAAAGCAACACACATATTGTACAAattaaaaacctggaaaaaaaaaaataataataataaaaaaaaaatgtcccactGACAGTTTGATCGGAGCGCATCTCATTTCTGAGATGTGGACGCATCGTGGTTTACATGTGTGACTCAAACACTGCTGCTATAGAGTACAGCTCATTAAATGTCCGGACAAAATGAAACGCTGTGAAGGACGCAGTTGCTTATAACTATtatattaacaataataataataataataatgttttccATGATAACATTGACATTGAGTGAAGACAGGATGGAGATAAAAATTTTGCTAATGTAGATTcttgtgtgtcaaatgtttgtgatgacgcgcgcgcgcgtgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcccaagaaaataataattgtctGCTCAGGGTACTTTCACAAGTTgatgaaatattcaaaaaacagaaactcttcAGAATTGTACAAGTATAAAAAGCTACAAACATTAATAAATTACATCACTGACACATAAACACTTCACAAGGTGCTAGTAAAATAACTCCGAAACCCTTCAGGACACTAGAACTGGAACAAGAGGCTGGTCACAGAAacttgaagtgttttttttttgtttgttttttgtccttttatattatttttcccCTCAAAGCTTCGTTCTTGTTCTAACAGAATCACAATACAATTAGCTTTGTGTATGTAAGGCCATATGACAAtataatgtattcatttttctgttgttttccagGCAACACCTTTAAAGTGTAACtaccgtttcttttttttcaacttggaccctattttcttatgttgtgtctaagtgactgatgagaacaacaatctttgacattgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58348 True 968 lncRNA 0.36 1 33867580 33868547

Neighbor

gene id symbol gene type direction distance location
barx1 barx1 coding upstream 102072 33760090 ~ 33765508 (+)
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding upstream 349456 33516838 ~ 33518124 (+)
LOC120557832 LOC106528837,LOC107102779 coding upstream 363272 33503798 ~ 33504308 (+)
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding upstream 431472 33435527 ~ 33436108 (+)
LOC120557839 LOC107671222,LOC106963510,LOC107723971 coding upstream 513757 33353406 ~ 33353823 (+)
znf831 NA coding downstream 157764 34026311 ~ 34040283 (+)
LOC120557827 NA coding downstream 178885 34047432 ~ 34067342 (+)
LOC120557093 NA coding downstream 501682 34370229 ~ 34371094 (+)
LOC120557490 NA coding downstream 1136395 35004942 ~ 35006128 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding downstream 1294937 35163484 ~ 35199996 (+)
LOC120557846 samd3,LOC101476819 non-coding upstream 82445 33784327 ~ 33785135 (+)
G43444 NA non-coding upstream 91189 33776190 ~ 33776391 (+)
G43413 NA non-coding upstream 298670 33568467 ~ 33568910 (+)
G43412 NA non-coding upstream 304091 33559300 ~ 33563489 (+)
G43409 NA non-coding upstream 312402 33553375 ~ 33555178 (+)
G43474 NA non-coding downstream 87410 33955957 ~ 33956156 (+)
G43512 NA non-coding downstream 202323 34070870 ~ 34071072 (+)
G43514 NA non-coding downstream 207324 34075871 ~ 34147068 (+)
LOC120557850 NA non-coding downstream 289458 34158005 ~ 34159010 (+)
G43533 NA non-coding downstream 305962 34174509 ~ 34174806 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 521774 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 530813 33262195 ~ 33336767 (+)
G43277 NA other upstream 655262 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 826269 33037934 ~ 33041311 (+)
G43051 LOC102201960 other upstream 1395975 32470795 ~ 32471605 (+)
G43656 NA other downstream 796689 34665236 ~ 34667182 (+)
LOC120556915 NA other downstream 1595225 35463772 ~ 35486235 (+)
G43924 NA other downstream 1795596 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 2093992 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 2834708 36703255 ~ 36711295 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) rbm24b LOC106596654 misc NC_048566.1 CM023220.2 6855864 ~ 6868976 (+)
bowfin (Amia calva) G19275 NA non-coding CM030122.1 CM030122.1 51295832 ~ 51296718 (+)
tiger barb (Puntius tetrazona) G83830 NA non-coding NC_056709.1 CM032078.1 21979751 ~ 22043312 (+)