Gene
RNA
| Item | Value |
|---|---|
| gene id | rps21 |
| gene name | rps21 |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 1236385 ~ 1245228 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| rps21 | Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21). |
| description |
|---|
| 40S ribosomal protein S21-like |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02971 | RP-S21e, RPS21; small subunit ribosomal protein S21e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU61886 | False | 482 | TUCP | 0.48 | 6 | 1236385 | 1245125 |
| XM_039801864.1 | True | 482 | mRNA | 0.49 | 6 | 1236488 | 1245228 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lama5 | lama5 | coding | downstream | 39439 | 1053765 ~ 1196946 (-) |
| LOC120558453 | LOC107672516 | coding | downstream | 324896 | 906419 ~ 911489 (-) |
| LOC120559614 | NA | coding | downstream | 720670 | 513597 ~ 515715 (-) |
| dnmt3bb.1 | NA | coding | downstream | 765735 | 406764 ~ 470650 (-) |
| LOC120559840 | NA | coding | downstream | 832332 | 366932 ~ 404053 (-) |
| LOC120559514 | LOC103358259,LOC102226488,LOC106938067 | coding | upstream | 34958 | 1280186 ~ 1314408 (-) |
| LOC120559785 | NA | coding | upstream | 149745 | 1394973 ~ 1402453 (-) |
| LOC120558467 | NA | coding | upstream | 158235 | 1403463 ~ 1424387 (-) |
| LOC120559394 | NA | coding | upstream | 538583 | 1783811 ~ 1787192 (-) |
| LOC120559416 | NA | coding | upstream | 659607 | 1904835 ~ 1906323 (-) |
| G46229 | NA | non-coding | downstream | 26346 | 1209212 ~ 1210039 (-) |
| G46225 | NA | non-coding | downstream | 84426 | 1151407 ~ 1151959 (-) |
| G46214 | LOC103356004 | non-coding | downstream | 190982 | 1031669 ~ 1045403 (-) |
| G46201 | NA | non-coding | downstream | 253166 | 983007 ~ 983219 (-) |
| G46155 | NA | non-coding | downstream | 317722 | 918433 ~ 918663 (-) |
| G46237 | NA | non-coding | upstream | 13191 | 1258419 ~ 1258780 (-) |
| G46281 | NA | non-coding | upstream | 90130 | 1335358 ~ 1336347 (-) |
| G46282 | NA | non-coding | upstream | 114166 | 1359394 ~ 1360526 (-) |
| G46283 | NA | non-coding | upstream | 115473 | 1360701 ~ 1362410 (-) |
| G46284 | NA | non-coding | upstream | 117377 | 1362605 ~ 1363102 (-) |
| G46199 | NA | other | downstream | 254274 | 976808 ~ 982111 (-) |
| LOC120558775 | adrm1 | other | downstream | 298183 | 933032 ~ 938202 (-) |
| tpd52l2b | NA | other | downstream | 308766 | 920249 ~ 927619 (-) |
| trnas-aga_6 | NA | other | downstream | 330801 | 905500 ~ 905584 (-) |
| ppdpfb | LOC103356003 | other | downstream | 336222 | 838071 ~ 900163 (-) |
| LOC120559407 | NA | other | upstream | 1084426 | 2329654 ~ 2335701 (-) |
| G46698 | NA | other | upstream | 1101277 | 2346505 ~ 2347504 (-) |
| G46817 | NA | other | upstream | 2037813 | 3283041 ~ 3285923 (-) |
| LOC120559401 | NA | other | upstream | 2245776 | 3491004 ~ 3493963 (-) |
| LOC120559679 | LOC103384848,LOC102790723,LOC100693496 | other | upstream | 2689283 | 3934511 ~ 3950171 (-) |
