G47162 (samd3,LOC101476819)


Basic Information

Item Value
gene id G47162
gene name samd3,LOC101476819
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4391269 ~ 4391763 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63077
AGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccatgatgaacaggaaatccatgacatacacaccaagcgcactactgttctccacgtccttcctgtgtatctgcgtgaggacgtctctggatgtttaagaacctgcacag

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
uncharacterized protein LOC101476819

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63077 True 267 lncRNA 0.47 2 4391269 4391763

Neighbor

gene id symbol gene type direction distance location
LOC120559100 LOC100709480,LOC103374188,LOC101478014,LOC102305352,LOC102202239,LOC102794305 coding downstream 10208 4283188 ~ 4381061 (-)
asxl1 LOC102292987,LOC107098928 coding downstream 385621 3983273 ~ 4005648 (-)
LOC120558369 NA coding downstream 436499 3952301 ~ 3954770 (-)
si:dkey-16n15.6 LOC103362245 coding downstream 463113 3913993 ~ 3928156 (-)
LOC120559452 suv39h1,LOC102791492 coding downstream 481499 3880310 ~ 3909770 (-)
efhd2 efhd2,LOC102781412 coding upstream 285937 4677700 ~ 4705540 (-)
LOC120558499 LOC105418166,LOC101068103,LOC108412963,LOC106522608,LOC108431938,LOC105419408,LOC106674638,LOC108415465 coding upstream 815459 5207222 ~ 5218713 (-)
LOC120559579 LOC103144399 coding upstream 1346558 5738321 ~ 5741953 (-)
tcea2 LOC103367858,LOC108232081 coding upstream 2014600 6406363 ~ 6427923 (-)
LOC120558793 NA coding upstream 2424944 6816707 ~ 6823536 (-)
G47122 NA non-coding downstream 194220 4196788 ~ 4197049 (-)
G47092 NA non-coding downstream 331556 4050510 ~ 4059713 (-)
G47093 mfn2,LOC102789666 non-coding downstream 335927 4052717 ~ 4055342 (-)
G47091 NA non-coding downstream 378571 3981177 ~ 4012698 (-)
G47083 NA non-coding downstream 422140 3966776 ~ 3969129 (-)
LOC120558635 NA non-coding upstream 70024 4461787 ~ 4462206 (-)
LOC120558634 NA non-coding upstream 234200 4625963 ~ 4628523 (-)
LOC120559646 NA non-coding upstream 242551 4634314 ~ 4635440 (-)
LOC120559758 NA non-coding upstream 247330 4639093 ~ 4640142 (-)
LOC120559128 NA non-coding upstream 317629 4709392 ~ 4710407 (-)
G47059 LOC102202574 other downstream 434887 3955604 ~ 3956382 (-)
G47058 NA other downstream 435740 3955026 ~ 3955529 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other downstream 441098 3934511 ~ 3950171 (-)
LOC120559401 NA other downstream 897306 3491004 ~ 3493963 (-)
G46817 NA other downstream 1105346 3283041 ~ 3285923 (-)
dedd dedd,LOC103374682 other upstream 199684 4591447 ~ 4621836 (-)
G47252 NA other upstream 338738 4730501 ~ 4731141 (-)
G47254 NA other upstream 341033 4732796 ~ 4733285 (-)
G47624 NA other upstream 2304682 6696445 ~ 6721729 (-)
G47638 NA other upstream 2412378 6804141 ~ 6805706 (-)

Expression


Co-expression Network