G47641


Basic Information

Item Value
gene id G47641
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6826253 ~ 6827520 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63642
attgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccatacatacccttctcatctccgtgcgtgtcgtaactctgtctgacgcacccaccgctagcctagcttagcacagatcctggaggtaaccggctcaatctagcctactgctcctaataagtgacaaaataacgccaacattttcctatttacatgttgtgatttgtatagtcacagcgtgtacaaataacaaggtcacatgagacacagccatcttctaaccgtatataaactgggaactatattctcagaaggcgaagcactgctacttctgctacttgggcggagtgatttgcttgcagcacctgagaagccccgtggtgaggagcagagagaaacaacggtgcttttcaggtgttgcgctaatcactccgcccaagtagcagtgctacTAGTGTTACCGGCACCAGGCCTAGGGGAAATCTGGACCGGCAGCAATGGCTACACAGGCTAGGAAGCACTGCGTAGCTTAAGAAAACTGGGAACTGTGAATCAATAGATAGAGAG

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63642 True 560 lncRNA 0.48 2 6826253 6827520

Neighbor

gene id symbol gene type direction distance location
LOC120558793 NA coding downstream 2717 6816707 ~ 6823536 (-)
tcea2 LOC103367858,LOC108232081 coding downstream 398330 6406363 ~ 6427923 (-)
LOC120559579 LOC103144399 coding downstream 1084300 5738321 ~ 5741953 (-)
LOC120558499 LOC105418166,LOC101068103,LOC108412963,LOC106522608,LOC108431938,LOC105419408,LOC106674638,LOC108415465 coding downstream 1607540 5207222 ~ 5218713 (-)
efhd2 efhd2,LOC102781412 coding downstream 2120713 4677700 ~ 4705540 (-)
LOC120558600 NA coding upstream 165 6827685 ~ 6838050 (-)
LOC120558601 NA coding upstream 18515 6846035 ~ 6848369 (-)
LOC120558623 NA coding upstream 469046 7296566 ~ 7299426 (-)
LOC120558800 NA coding upstream 492505 7320025 ~ 7359408 (-)
LOC120558624 NA coding upstream 548206 7375726 ~ 7407678 (-)
G47498 NA non-coding downstream 254129 6571892 ~ 6572124 (-)
G47485 NA non-coding downstream 452710 6366360 ~ 6373543 (-)
G47459 NA non-coding downstream 589415 6232908 ~ 6236838 (-)
G47447 NA non-coding downstream 684364 6118484 ~ 6141889 (-)
G47439 NA non-coding downstream 789755 6036255 ~ 6036498 (-)
LOC120558809 NA non-coding upstream 222228 7049748 ~ 7270452 (-)
G47677 NA non-coding upstream 223794 7051314 ~ 7051795 (-)
G47693 NA non-coding upstream 352588 7180108 ~ 7266048 (-)
LOC120558811 NA non-coding upstream 387943 7215463 ~ 7218392 (-)
LOC120558805 NA non-coding upstream 472305 7299825 ~ 7303561 (-)
G47638 NA other downstream 20547 6804141 ~ 6805706 (-)
G47624 NA other downstream 104524 6696445 ~ 6721729 (-)
G47254 NA other downstream 2092968 4732796 ~ 4733285 (-)
G47252 NA other downstream 2095112 4730501 ~ 4731141 (-)
dedd dedd,LOC103374682 other downstream 2204417 4591447 ~ 4621836 (-)
LOC120558602 NA other upstream 127684 6955204 ~ 7036375 (-)
G47814 NA other upstream 657907 7485427 ~ 7498802 (-)
G47934 LOC103363443,LOC106920718,LOC105016959,LOC102211704,LOC108251018 other upstream 944416 7771936 ~ 8187551 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other upstream 987631 7815151 ~ 7886850 (-)
ada ada other upstream 1553597 8381117 ~ 8409734 (-)

Expression


Co-expression Network