LOC120558662


Basic Information

Item Value
gene id LOC120558662
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7507296 ~ 7508425 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63857
acgctgtcaggatttttacaatgtcactggttttcagtttcaactttctgtcactgttttggcgtagggaggaggggccTGAGGGGAGGGACAAAGGGGCGTGGTGTACAggtaatttgcataggctactgggAGAGACCGCAGCTCCACAGGCATCCTCACAGATTACCCATATCTGCAATGGcttccacaagttcacctggaacctccaaatctcaaGATATACAAGATCTTTTCTTGGAGGGGGACCGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCCGCAGACTGTGGCAGAACTATGTGATTCTTTACACATAAACATGGCAGGACAACAcaggaaaaacattttgtttgttattttaaaatgacaaataccACTACTACTTTATATGTAGTACTGATTTTAATCCTTAACAATTTTTGAAATgacatgcatttacagtatgggCTCCAGCAAAACAGTTAAATCTGTACCTTTTCAgtgaata
>XR_005639162.1
tgtcactggttttcagtttcaactttctgtcactgttttggcgtagggaggaggggccTGAGGGGAGGGACAAAGGGGCGTGGTGTACAggtaatttgcataggctactgggAGAGACCGCAGCTCCACAGGCATCCTCACAGATTACCCATATCTGCAATGGcttccacaagttcacctggaacctccaaatctcaaGATATACAAGATCTTTTCTTGGAGGGGGACCGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCCGCAGACTGTGGCAGAACTATGTGATTCTTTACACATAAACATGGCAGGACAACAcaggaaaaacattttgtttgttattttaaaatgacaaataccACTACTACTTTATATGTAGTACTGATTTTAATCCTTAACAATTTTTGAAATgacatgcatttacagtatgggCTCCAGCAAAACAGTTAAATCTGTACCTTTTCAgtgaataacaaataaatatattcaagtAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63857 False 517 lncRNA 0.43 2 7507321 7508425
XR_005639162.1 True 521 lncRNA 0.42 2 7507296 7508404

Neighbor

gene id symbol gene type direction distance location
LOC120558801 NA coding downstream 59447 7439183 ~ 7447849 (-)
LOC120558624 NA coding downstream 99618 7375726 ~ 7407678 (-)
LOC120558800 NA coding downstream 147888 7320025 ~ 7359408 (-)
LOC120558623 NA coding downstream 207870 7296566 ~ 7299426 (-)
LOC120558601 NA coding downstream 658927 6846035 ~ 6848369 (-)
hsd17b10 hsd17b10 coding upstream 82476 7590901 ~ 7599774 (-)
fam120c fam120c coding upstream 104062 7612487 ~ 7632545 (-)
LOC120558669 LOC103363413,LOC108230764 coding upstream 166037 7674462 ~ 7707260 (-)
spryd3 LOC100708393,LOC102193977,LOC103366148,LOC102305037,LOC101464627,LOC102799700 coding upstream 269362 7777787 ~ 7844399 (-)
LOC120558974 zbtb39,LOC102796472 coding upstream 381402 7889827 ~ 7898293 (-)
G47817 NA non-coding downstream 6376 7500657 ~ 7500920 (-)
G47759 LOC104951079 non-coding downstream 65103 7441921 ~ 7442193 (-)
G47758 NA non-coding downstream 68432 7438503 ~ 7438864 (-)
G47757 NA non-coding downstream 69478 7437500 ~ 7437818 (-)
G47756 NA non-coding downstream 79371 7427534 ~ 7427925 (-)
G47846 NA non-coding upstream 95542 7603967 ~ 7605303 (-)
G47837 NA non-coding upstream 99466 7607891 ~ 7623479 (-)
G47949 NA non-coding upstream 424524 7932949 ~ 7955256 (-)
G47956 NA non-coding upstream 483444 7991869 ~ 7994732 (-)
G47971 NA non-coding upstream 538874 8047299 ~ 8074235 (-)
G47814 NA other downstream 8494 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 470921 6955204 ~ 7036375 (-)
G47638 NA other downstream 701590 6804141 ~ 6805706 (-)
G47624 NA other downstream 785567 6696445 ~ 6721729 (-)
G47254 NA other downstream 2774011 4732796 ~ 4733285 (-)
G47934 LOC103363443,LOC106920718,LOC105016959,LOC102211704,LOC108251018 other upstream 263511 7771936 ~ 8187551 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other upstream 306726 7815151 ~ 7886850 (-)
ada ada other upstream 872692 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 1194540 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1870575 9379000 ~ 9408403 (-)

Expression


Co-expression Network