G47935 (LOC107659949,LOC107714908,LOC106456382,LOC103385300)


Basic Information

Item Value
gene id G47935
gene name LOC107659949,LOC107714908,LOC106456382,LOC103385300
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8178655 ~ 8179100 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64020
GTTGTTCGCAGCGTCCTCCTTGCCGGTGATCAGCTGCTCAGGGTGGAACAGCTGGCGGTAGGTCCCAGTACGCACCTCATCGATGACAGTGGGCTCCAGGTCGACAAATACAGCTCTGGGGACGTGTTTTCCAGCTCCAGTCTCACTGAAGAAGGTGTTGAAGGAATCGTCTCCTCCTCCGAGAGTCTTGTCACTGGGCATCTGTCCGTCCGGCTGGATCCCATGTTCCAGGCAGTAAAGCTCCCAGCAGGCATTGCCAATCTGGACACCAGCCTGACCGACGTGGATGGAGATACACTCACGCTGGGATGCAGAGACCGAAAATTTGGATTACAGATTTGATTAAATCT

Function

NR:

description
PREDICTED: tubulin alpha-1A chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64020 True 350 lncRNA 0.55 2 8178655 8179100

Neighbor

gene id symbol gene type direction distance location
LOC120558991 LOC108255233,LOC108247626,LOC103363443,LOC102224440,LOC102211704,LOC108251018 coding downstream 3663 8172190 ~ 8174992 (-)
LOC120558989 tuba1c,LOC106676044,LOC102211704,LOC103363443,LOC103148207,LOC107557552,LOC108255233 coding downstream 8929 8164469 ~ 8169726 (-)
LOC120558984 sarnp,LOC102800079 coding downstream 47918 8123547 ~ 8130737 (-)
ccnt1 ccnt1 coding downstream 57956 8114125 ~ 8120699 (-)
kansl2 kansl2,LOC102799133 coding downstream 66420 8100939 ~ 8112235 (-)
jph2 jph2,LOC104937215 coding upstream 8968 8188068 ~ 8217881 (-)
fitm2 fitm2 coding upstream 73078 8252178 ~ 8255966 (-)
LOC120559283 NA coding upstream 393579 8572679 ~ 8577776 (-)
gdi1 gdi1,LOC105918302,LOC100709395 coding upstream 453955 8633055 ~ 8643551 (-)
taf8 taf8 coding upstream 483376 8662476 ~ 8674082 (-)
G47971 NA non-coding downstream 104420 8047299 ~ 8074235 (-)
G47972 NA non-coding downstream 128234 8047822 ~ 8050421 (-)
G47956 NA non-coding downstream 183923 7991869 ~ 7994732 (-)
G47949 NA non-coding downstream 223399 7932949 ~ 7955256 (-)
G47837 NA non-coding downstream 555176 7607891 ~ 7623479 (-)
LOC120559498 NA non-coding upstream 102847 8281947 ~ 8296468 (-)
G48010 ttpal non-coding upstream 151017 8330117 ~ 8333521 (-)
G48128 NA non-coding upstream 432598 8611698 ~ 8654319 (-)
G48153 NA non-coding upstream 528440 8707540 ~ 8707965 (-)
LOC120558360 NA non-coding upstream 564235 8743335 ~ 8746512 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other downstream 291805 7815151 ~ 7886850 (-)
G47814 NA other downstream 679853 7485427 ~ 7498802 (-)
LOC120558602 NA other downstream 1142280 6955204 ~ 7036375 (-)
G47638 NA other downstream 1372949 6804141 ~ 6805706 (-)
G47624 NA other downstream 1456926 6696445 ~ 6721729 (-)
ada ada other upstream 202017 8381117 ~ 8409734 (-)
LOC120559289 LOC106911506,LOC106515592 other upstream 523865 8702965 ~ 8705483 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 1199900 9379000 ~ 9408403 (-)
plekhg5b plekhg5 other upstream 1248106 9427206 ~ 9519455 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other upstream 1510629 9689729 ~ 9724134 (-)

Expression


Co-expression Network