G48477 (cptp)


Basic Information

Item Value
gene id G48477
gene name cptp
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9916578 ~ 9918879 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64726
caccactgtaccactgaacagaaatagaaaaaagtCATGCGTGCAAATGTAATAAGGACAGTAGCATCAAATGATATCAAAAGTACAAGTACTCATTTTGCAAAATGGGCAATTTCAGAATAATGTATgttattggattataattattgagcTACTTTTGACTTTATTCATTAGAAGTACCCCACTGTGACCACTACACTGTCTATATACTATACCATGAGCATATAAAAACATGACACAATCAAAGTTAACCTACAGTATGTCCTCATTTACTTTACTTAAGACAACAGGTAATCAATAATCAATCCTCAACTCTAACATAACACAAATATTCACAATCATCAACCAAGTGACATTTCTTTTCTTAAAGCTACAGTTTATAAATTCTGTTTGATTTATTGGTAAGATGTTTTGCcatttgttatatattttttttaaatttaagcaTCCACATTGTTCCACCACCATCTGTCTCGTAATGTTAGCCTTGTTTTGAATCTTTACGATGAATGTCATACTGTTGCCATGTTTAGACCTTTCTGCTAACTAAATAATTGGTTTGGAAACTGCTACTCTGGCTGCAGATTGCTGGTGGTCTTCTATctgtattaatttttttttttacaagattAAGGTAATTTATGCAATATCTGGTATCATCCAATATCAGATAATCTAGTATTAGATAAATCTGTCAATACTTGAATGAAATATAGTATGAGAACATCAAAGATTTAACCTAATGGCCCTATTATTACACTATTATTTCATACAAGCATTTCTGTAATGCATACAATCATGATTGGGAACAGTTCTAAATAGAACTGTGACTAACAATTGTTTTCATGATCAATTTGCTGATATCCAAATctgtcaaaaaacaaaaaaatattcaattcaCTATGGCGTAAGACCAAGAAGAGCAGCACATTCTAGAACCTGAAACCATCAAATATttagtgtttctgtttgtgaaaAATTACTTGAATGATTAATCgattgtcaaaatagttgcagtAATAATTTAAACAAACAGCTACTGGCAGTGAGCAAAGACTTCTGGGCCCAACTGTTCCCCTTCATCTACTTTAATCCAAATGAATACATCTcgaaaaagttgaataaaaacaaagtccattatacacacatatataataattaacAGTACTTATATATATGAAAAATTGTAATACTGTACTAGATAGTGTCAGTGGAATTTTGCTTAATTAATAACCCTTTAATCACCAAACAGGAGTAGCAGCCACCATGACAGCCCTTCATATTTAATAGTGTAACATATGAAGTGGCATATAATAGCAAATGTGTCCCTCTATGGTAAGTCAAGCAGGTTTTGTTGAGCGTAAAGTTCTTCAGTGATCTGGTACACCTCAGAGATGAGAGGCACAGCTTCCCCTAGCATGGCCACCACCTGCTCGGGGGGGCCCACATTCATCACTTCTAAGAAAGCGGGGCGCCCTGGGAGCACGCAGAAGGCCATGCCCGCTGCTTTGCGGACCACCCAAGGGTGGTGCTGGGAGAGAGACTCATTGTAGGCCTCTGAACACATGACCGAAGTCTTGCTGTCCTCGCTGCTGGTGCGGAGGCGCTCCAGGAAGAGCTCCAGCCACCTCAGTGCCCGGTGGAGCCTCAGCAAGGTACGGCAGCCGGACTCTGGATGACTGCCTCTCTTGGTCAGGTCCACTAGTTCATTGTCCAGCTCATATTTCACCATTGACTGGACAGTGACATACTGAGACCCGTTCTCACCGTGCAGGTAAGTGACCAGGATATTGATCTTGTTGACAGCATCCTTGGAAATGAAGCCAAACACACTGCCCAAGCTGTTCAGAACTTAACAAGACCTCGCCACCCAGCGACGTAGTGTTCAAGATAGACGTCTTTTTTCTCCGACAAACACAACTTGAAAGTATCGAGCACCTCCTGTAAGCAGAATTTCTGGTCTTCTTGAGAACCAGCCATGGTTTTCTATGCGGAAGTGCTATCGACGAAAGCCAACAACAAGGCAACAAATGAATGTGCAAATGTGGCTAACGGCTACCAACAAACTGGAGGTCGAACCAAATGTAAGTACTGAGGTGTAAACTCAAAGACTGAACACATTACCTGCAAGAGAAATTTAACAAAGATTGAAAATTGCTCTACATCTCAGTGAAACGACAGGTCATTCCTGCTCTAATCCGCCTCTA

Function

symbol description
cptp Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).

NR:

description
PREDICTED: ceramide-1-phosphate transfer protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64726 True 2207 lncRNA 0.39 2 9916578 9918879

Neighbor

gene id symbol gene type direction distance location
ints11 cpsf3l coding downstream 443 9904308 ~ 9916135 (-)
LOC120558325 NA coding downstream 14920 9890555 ~ 9901658 (-)
LOC120558654 LOC103359731 coding downstream 34882 9787365 ~ 9881696 (-)
klhl21 klhl21 coding downstream 230944 9548670 ~ 9685634 (-)
nol9 nol9 coding downstream 380895 9522095 ~ 9535683 (-)
zgc:193690 LOC104936306,LOC102788238,LOC100707688,LOC102213016,LOC101470444,LOC102313919 coding upstream 6298 9925177 ~ 9933192 (-)
mul1b mul1 coding upstream 59374 9978253 ~ 9985133 (-)
LOC120558779 LOC101471596,LOC102789400,LOC103365659 coding upstream 176034 10094913 ~ 10109100 (-)
LOC120558781 LOC105013598,LOC108237630,LOC101472165,LOC107390417,LOC101079871 coding upstream 212812 10131691 ~ 10136381 (-)
si:ch73-206d17.1 NA coding upstream 397940 10316819 ~ 10325211 (-)
G48479 NA non-coding downstream 22752 9892968 ~ 9893826 (-)
LOC120558310 NA non-coding downstream 150389 9764068 ~ 9766189 (-)
G48436 NA non-coding downstream 154129 9760890 ~ 9762449 (-)
G48430 NA non-coding downstream 351364 9564964 ~ 9565214 (-)
G48311 NA non-coding downstream 631326 9284917 ~ 9285252 (-)
LOC120558372 NA non-coding upstream 95524 10014403 ~ 10018354 (-)
G48522 NA non-coding upstream 104249 10023128 ~ 10023993 (-)
G48569 NA non-coding upstream 380665 10299544 ~ 10299879 (-)
G48617 LOC103365731,LOC108237576,LOC102292634,LOC100710458,LOC104928629,LOC101473555 non-coding upstream 384572 10303451 ~ 10375462 (-)
G48623 NA non-coding upstream 485258 10404137 ~ 10404797 (-)
hipk1a LOC103359735 other downstream 131337 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 162892 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 192444 9689729 ~ 9724134 (-)
plekhg5b plekhg5 other downstream 397123 9427206 ~ 9519455 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other downstream 508175 9379000 ~ 9408403 (-)
G48523 NA other upstream 106115 10024994 ~ 10025825 (-)
G48697 NA other upstream 722526 10641405 ~ 10733887 (-)
LOC120558961 NA other upstream 1584948 11503827 ~ 11508337 (-)
srxn1 srxn1 other upstream 1967086 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 2040500 11959379 ~ 11979035 (-)

Expression


Co-expression Network