LOC120558372


Basic Information

Item Value
gene id LOC120558372
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10014403 ~ 10018354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64766
AATAATTTTCCCTCTGTGTTGAAGCTTGAAGGGGGATCCATACTGATAAGGATAAACAGCGGGTCCAGGACTTGGCCCATGCCTGGGACCTCCCTTGCCTAACTGAGAAAAACAGGAGATGGATTTTTGAGAAGCTATTGATCCATGCTGTACTTCAGCAACTCACATGGCCTCGTGAGGATAGTGACGATGATAAAGTTGACACCAAATGCCGCATATCAGGCTATCTTCGACAGTTCGTTGCTGATGCAACACCAACTGAACTGACCGACCTGGTCAAATTCTGGACCGGATGGGAGATTCTACCACCGAGTCTCTCTGTAGAAGTGGTCGAGGGCAGATACCCCACAGCCGCCACTTGCTTTGAGACCTTGCACATCCCAGGGCATTACAAGGATTACACATCTTTTAAATGTGACATCCTGGTCTGTATTTGCAGTTGCCATACAGGATTTGACTTGTATTTACTTGATTGTCCCTGCTTGTTAATTCTGTTAAAAGATCTGTTGTAAACTCTCACGCTC
>XR_005639098.1
actgaggtatcaaaattggcaccggatcgaaagattttgaatgatacccagccctatcaaGTTCTGAGGTTTAGTATTAAACTTTAGTTCATGTACATATGGCTTATTTTACTTAAACATTGCAGATGTATTGATTAATACATATTCTTGGATACAATCCTGCAGAGAACAGAGGCATTCGGAGAGACCATCACTTCAAATGGAAATGACCAGCTTGAAGGGGGATCCATACTGATAAGGATAAACAGCGGGTCCAGGACTTGGCCCATGCCTGGGACCTCCCTTGCCTAACTGAGAAAAACAGGAGATGGATTTTTGAGAAGCTATTGATCCATGCTGTACTTCAGCAACTCACATGGCCTCGTGAGGATAGTGACGATGATAAAGTTGACACCAAATGCCGCATATCAGGCTATCTTCGACAGTTCGTTGCTGATGCAACACCAACTGAACTGACCGACCTGGTCAAATTCTGGACCGGATGGGAGATTCTACCACCGAGTCTCTCTGTAGAAGTGGTCGAGGGCAGATACCCCACAGCCGCCACTTGCTTTGAGACCTTGCACATCCCAGGGCATTACAAGGATTACACATCTTTTAAATGTGACATCCTGGTCTGTATTTGCAGTTGCCATACAGGATTTGACTTGTATTTACTTGATTGTCCCTGCTTGTTAATTCTGTTAAAAGATCTGTTGTAAACTCTCACGCTCAAAGAAACCTTCAGGAACTTGTTAATGTATACTGAATATAATTTCACACTGTTACTGAGAGTACTTTGCAGTAACCTTTGGCAATAAATGGTCAGTTCATTGAGGTAAACGTCTGACTCTGAACTCCTGTGAAGCCCTCATAACCATTGAAAAGGTTCATGATCCTTTCACACGGTGTAAGGGGACTGACAGCAAAAGAGAATAAATGGCAGTAAAAATTAGAAAAGGTTATTAACCCtttcttcccgtcgaccatgcacttgtcctcccgggtcaaaattgacccggtctgtttgtccagtttataaagcatgaagtataaattatcacccaattctgttttacatcttcttagccaacttcTTTCCAACCTATTATCACTAGTTTGCACTTATTTTAATATATGGTCAAAATACCGCAGTTGTATAAAATTATACCTCAtttctgagtaaaaaaaaaagctgaaatgaattattttgactaacttGAGATAAACCGGAACATATGTTGATGGGTTAGCACAGACTGGTataagtcaaagtttagtcaggatactgttttgaa
>XR_005639099.1
CTCAGCATGGCTCAGAACACAAACGATGGTGCTACGAGAACAGAGGCATTCGGAGAGACCATCACTTCAAATGGAAATGACCAGCTTGAAGGGGGATCCATACTGATAAGGATAAACAGCGGGTCCAGGACTTGGCCCATGCCTGGGACCTCCCTTGCCTAACTGAGAAAAACAGGAGATGGATTTTTGAGAAGCTATTGATCCATGCTGTACTTCAGCAACTCACATGGCCTCGTGAGGATAGTGACGATGATAAAGTTGACACCAAATGCCGCATATCAGGCTATCTTCGACAGTTCGTTGCTGATGCAACACCAACTGAACTGACCGACCTGGTCAAATTCTGGACCGGATGGGAGATTCTACCACCGAGTCTCTCTGTAGAAGTGGTCGAGGGCAGATACCCCACAGCCGCCACTTGCTTTGAGACCTTGCACATCCCAGGGCATTACAAGGATTACACATCTTTTAAATGTGACATCCTGGTCTGTATTTGCAGTTGCCATACAGGATTTGACTTGTATTTACTTGATTGTCCCTGCTTGTTAATTCTGTTAAAAGATCTGTTGTAAACTCTCACGCTCAAAGAAACCTTCAGGAACTTGTTAATGTATACTGAATATAATTTCACACTGTTACTGAGAGTACTTTGCAGTAACCTTTGGCAATAAATGGTCAGTTCATTGAGGTAAACGTCTGACTCTGAACTCCTGTGAAGCCCTCATAACCATTGAAAAGGTTCATGATCCTTTCACACGGTGTAAGGGGACTGACAGCAAAAGAGAATAAATGGCAGTAAAAATTAGAAAAGGTTATTAACCCtttcttcccgtcgaccatgcacttgtcctcccgggtcaaaattgacccggtctgtttgtccagtttataaagcatgaagtataaattatcacccaattctgttttacatcttcttagccaacttcTTTCCAACCTATTATCACTAGTTTGCACTTATTTTAATATATGGTCAAAATACCGCAGTTGTATAAAATTATACCTCAtttctgagtaaaaaaaaaagctgaaatgaattattttgactaacttGAGATAAACCGGAACATATGTTGATGGGTTAGCACAGACTGGTataagtcaaagtttagtcaggatactgttttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64766 False 524 lncRNA 0.46 3 10014967 10016118
XR_005639098.1 True 1277 lncRNA 0.40 4 10014403 10017139
XR_005639099.1 False 1148 lncRNA 0.42 5 10014403 10018354

Neighbor

gene id symbol gene type direction distance location
mul1b mul1 coding downstream 29270 9978253 ~ 9985133 (-)
zgc:193690 LOC104936306,LOC102788238,LOC100707688,LOC102213016,LOC101470444,LOC102313919 coding downstream 81211 9925177 ~ 9933192 (-)
ints11 cpsf3l coding downstream 98268 9904308 ~ 9916135 (-)
LOC120558325 NA coding downstream 112745 9890555 ~ 9901658 (-)
LOC120558654 LOC103359731 coding downstream 132707 9787365 ~ 9881696 (-)
LOC120558779 LOC101471596,LOC102789400,LOC103365659 coding upstream 76559 10094913 ~ 10109100 (-)
LOC120558781 LOC105013598,LOC108237630,LOC101472165,LOC107390417,LOC101079871 coding upstream 113337 10131691 ~ 10136381 (-)
si:ch73-206d17.1 NA coding upstream 298465 10316819 ~ 10325211 (-)
ptpn22 LOC106912495,LOC103467961 coding upstream 524579 10542933 ~ 10566475 (-)
si:dkey-261h17.1 LOC100710642 coding upstream 849504 10867858 ~ 10906926 (-)
G48477 cptp non-coding downstream 95524 9916578 ~ 9918879 (-)
G48479 NA non-coding downstream 120577 9892968 ~ 9893826 (-)
LOC120558310 NA non-coding downstream 248214 9764068 ~ 9766189 (-)
G48436 NA non-coding downstream 251954 9760890 ~ 9762449 (-)
G48430 NA non-coding downstream 449189 9564964 ~ 9565214 (-)
G48522 NA non-coding upstream 4774 10023128 ~ 10023993 (-)
G48569 NA non-coding upstream 281190 10299544 ~ 10299879 (-)
G48617 LOC103365731,LOC108237576,LOC102292634,LOC100710458,LOC104928629,LOC101473555 non-coding upstream 285097 10303451 ~ 10375462 (-)
G48623 NA non-coding upstream 385783 10404137 ~ 10404797 (-)
G48638 NA non-coding upstream 560722 10579076 ~ 10579364 (-)
hipk1a LOC103359735 other downstream 229162 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 260717 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 290269 9689729 ~ 9724134 (-)
plekhg5b plekhg5 other downstream 494948 9427206 ~ 9519455 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other downstream 606000 9379000 ~ 9408403 (-)
G48523 NA other upstream 6640 10024994 ~ 10025825 (-)
G48697 NA other upstream 623051 10641405 ~ 10733887 (-)
LOC120558961 NA other upstream 1485473 11503827 ~ 11508337 (-)
srxn1 srxn1 other upstream 1867611 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 1941025 11959379 ~ 11979035 (-)

Expression


Co-expression Network