G48705


Basic Information

Item Value
gene id G48705
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10668960 ~ 10787890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65050
AGAGCACGTTTTAAATGACTCCAGATGGTTGGCCACACCTGGCCTacagtgtgtgagtgaatggctGAATTACAGGCAACAATTGTAATAAATAgtccattttgttttatttcaacaattaattACAAAGAgtgatgtcaaaataaaagcttgcctCAACATAATATAAAACTCACTGAGATGTTGACACAATTTAGTTTGATAAATACAGATAAATAGCCAGGCAAGTGCAACATTTTCAAATCAGAAATCAATCTATTCAGCTTTATAGTGTCCTAATACTCTTAAAGTATGGGGGGGTAGTGTGACGGTATACAAATATTCATCTGACACTCTAGAAGAGAGATGTCTACAAAACCAATACCTGAtcaattattatttcttttaattattaacttaaattgttcctTGTCAGAGAAAACTGTTTTAACTTCATTTGGTGAAGCTAaacaacagacaacagacaaacaatgtgccaaaaatgccattaaacatGACAAATTATTAAGCATACACAGTTAAGGTAGGCCTACAATTAAGCCTCTATTAACAAACATTCAACAACtgacaaacaagctaaaacacttttttaaataaagcataTGGAACATGCCTTTTAGTTAGGTACTTTGCTTGGAACGGTTTCACAGATCCCATTGTTATTTACAAGACTGGAGGACTGGTTTATCGGCAAGGagcctctcatttacacaatgtattattatatccaTTCCAGTTACACAAATGGTGACATTTCTTAAAGAAGTAAATAGAGGCAAATTCACTGTGTTCTTAagcaaaaaaaactgaaactgaTAGACATTGATCGGTTTTAAAGTTTCTACAAAAACTATTAAATTCTTACAGCTGTATTTAGGGTCTACTCTACTGATTTTGCTTGTTTCAAGCCATCGGTGTAACTGAGCTGCAATGGGCAAGCTGAGCTGTGCTCTAAGCTATAGTGCAAAAGCTTAAAATAAACATGGGGTTTAAAGGGGCCGTACTCGACATTCAGAccattaatatagcagcaaacaaataaTTGCTATGTGAAGATATAGTGGGAGTAATGGCGTCCTTAGATAATGAAGTCCCACTccttaaggcctttttatgcTTTTGCGTAGAATCGACGGTGTACCCccacagacccctctgcgtctatgTCGGACCCTACACCTatcctgacgtgcacctctcgaaaaatttaactacacgtcgctcaaccatggcttggtagcgttgcatttcccctgactcatttcctgcttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctccagatttcccaccgtggtcagaaagaacaggggagacactttgtttctgtcATTATGACTCTAGACTCGGCACATGCTCctaagctaatcgccgtcactctctcacttctccctcactctaacacactgcccacacacacacacacacacacacacacacacacacacacacctagtcaaaagctctgcgtggagctgcgcagaaccataaaacggccttttgtgtgttgttatcctaatttctctgttctgtttcaATAGACGGTTTATAACAAAAACGTAGACATTGGGGAACGTTCTGTGAGAGCCTTGTGGAGGCAACCCTATCCCACTGTTTCAGTATTtcaagtacagcccctttaagcCTCTGATATATACAAAATCTCATTCCTTCATAATTGCGGCATGGAAACTCTGCTGTGATGTTGTAAAAAGAAATGGAAGGCATTCCAAACATCAGTTAATGGAATTATGTAGAAGGGGAAAAGTAGTAGTGAGTCAAAGATGGAAATATTGTTGATTTATTGGAGGAGCCGCTTGAAGCACGAGCTAAGGATTGAGATTAATTTGTTGAGGTTTCTGAATCTCGGACTGTTGTTCAGAAAGTCATTTCGGGAGGGGAGGGATGATTTCCCTGTGCAGGAAGAAGTCAAAGAAGTCCTCTTCTCAACCAGCCCTTTTTACTTCTAGTAATGTTGAAGATACAGGACCGTAATGCTTACTA
>TU65051
CGTTCAAATGGTAACGCCGTtctgtttttggtttgtttttgcgGTGTAACCGTTATTTTGTTCAAGCATGGGAACAGTGTTTTGACTTACCCAACTAAACGCGAAGAGTACCTGGCTGCTGCTAATCCACAATGGTGAATGTGTGCTGTTCCTGACGGCTACAGCTTCTTGTCGGAAACAGCAtggacagtaaaataaatggacaaaGTGACACCGTTGTTTTCAGCGGAGACCAGCGAAGTCTATTGTCTAATAATTTAACTACACGGCCATGGCTTGGTAGTGTTGCATTTCTGACTCATTTCCtgcttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctccagatttcccaccgtggtcagaaagaacaggggagacactttgtttctgtcATTATGACTCTAGACTCGGCACATGCTAAtcgccgtcactctctcacttctccctcactctaacacactgcccacacacacacacacacacactagtcaaaagctctgcgtggagctgcgcagaaccataaaacggccttttgtgtgttgttatcctaatttctctgttctgtttcaATAGACGGTTTATAACAAAAACGTAGACATTGGGGAACGTTCTGTGAGAGCCTTGTGGAGGCAACCCTATCCCACTGTTTCAGTATTtcaagtacagcccctttaagcCTCTGATATATACAAAATCTCATTCCTTCATAATTGCGGCATGGAAACTCTGCTGTGATGTTGTAAAAAGAAATGGAAGGCATTCCAAACATCAGTTAATGGAATTATGTAGAAGGGGAAAAGTAGTAGTGAGTCAAAGATGGAAATATTGTTGATTTATTGGAGGAGCCGCTTGAAGCACGAGCTAAGGATTGAGATTAATTTGTTGAGGTTTCTGAATCTCGGACTGTTGTTCAGAAAGTCATTTCGGGAGGGGAGGGATGATTTCCCTGTGCAGGAAGAAGTCAAAGAAGTCCTCTTCTCAACCAGCCCTTTTTACTTCTAGTAATGTTGAAGATACAGGACCGTAATGCTTACTA
>TU65053
CGTTCAAATGGTAACGCCGTtctgtttttggtttgtttttgcgGTGTAACCGTTATTTTGTTCAAGCATGGGAACAGTGTTTTGACTTACCCAACTAAACGCGAAGAGTACCTGGCTGCTGCTAATCCACAATGGTGAATGTGTGCTGTTCCTGACGGCTACAGCTTCTTGTCGGAAACAGCAtggacagtaaaataaatggacaaaGTGACACCGTTGTTTTCAGCGGAGACCAGCGAAGTCTATTGTCTAATAATTTAACTACACGGCCATGGCTTGGTAGTGTTGCATTTCTGACTCATTTCCtgcttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctccagatttcccaccgtggtcagaaagaacaggggagacactttgtttctgtcATTATGACTCTAGACTCGGCACATGCTAACGCTCGTCCACTCTCACTTCCCCTCACTCTAacacactaacaacacacacacacacacacacacacacacacacacacacacacacacacacacacttcccacacacacacacacacacacacacacacacacacacacacgcacactagtcaaaagctctgcgtggagctgcgcagaaccataaaacggccttttgtgtgttgttatcctaatttctctgttctgtttcaATAGACGGTTTATAACAAAAACGTAGACATTGGGGAACGTTCTGTGAGAGCCTTGTGGAGGCAACCCTATCCCACTGTTTCAGTATTtcaagtacagcccctttaagcCTCTGATATATACAAAATCTCATTCCTTCATAATTGCGGCATGGAAACTCTGCTGTGATGTTGTAAAAAGAAATGGAAGGCATTCCAAACATCAGTTAATGGAATTATGTAGAAGGGGAAAAGTAGTAGTGAGTCAAAGATGGAAATATTGTTGATTTATTGGAGGAGCCGCTTGAAGCACGAGCTAAGGATTGAGATTAATTTGTTGAGGTTTCTGAATCTCGGACTGTTGTTCAGAAAGTCATTTCGGGAGGGGAGGGATGATTTCCCTGTGCAGGAAGAAGTCAAAGAAGTCCTCTTCTCAACCAGCCCTTTTTACTTCTAGTAATGTTGAAGATACAGGACCGTAATGCTTACTACAGAAACAAAACAGCAAAGAAAGGAAAttttaatttgacatttttagacAAATtgtaaaacaacaaacaaacaaaaatacagcCCTGTGAAAGAGAAAGGGTTTTAAGAGAAGTAACACAGGCAGGGGGCAAACATGTAAGTTAACTGCTGCAGATAATACAGAAGGAAGAAAACATTAGTAATACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65050 True 2048 lncRNA 0.39 2 10669148 10703473
TU65051 False 1059 lncRNA 0.43 4 10669148 10787890
TU65053 False 1330 lncRNA 0.42 3 10668960 10787890

Neighbor

gene id symbol gene type direction distance location
ptpn22 LOC106912495,LOC103467961 coding downstream 102485 10542933 ~ 10566475 (-)
si:ch73-206d17.1 NA coding downstream 343749 10316819 ~ 10325211 (-)
LOC120558781 LOC105013598,LOC108237630,LOC101472165,LOC107390417,LOC101079871 coding downstream 532579 10131691 ~ 10136381 (-)
LOC120558779 LOC101471596,LOC102789400,LOC103365659 coding downstream 559860 10094913 ~ 10109100 (-)
mul1b mul1 coding downstream 683827 9978253 ~ 9985133 (-)
si:dkey-261h17.1 LOC100710642 coding upstream 79968 10867858 ~ 10906926 (-)
plxna2 LOC101478991,LOC100710907,LOC102296543 coding upstream 121928 10909818 ~ 11129310 (-)
LOC120558517 slc26a9 coding upstream 549717 11337607 ~ 11348247 (-)
slc48a1a slc48a1,LOC101074998 coding upstream 560396 11348286 ~ 11360195 (-)
itga5 LOC103365860,LOC103385260 coding upstream 594292 11382182 ~ 11421461 (-)
G48638 NA non-coding downstream 89596 10579076 ~ 10579364 (-)
G48623 NA non-coding downstream 264163 10404137 ~ 10404797 (-)
G48617 LOC103365731,LOC108237576,LOC102292634,LOC100710458,LOC104928629,LOC101473555 non-coding downstream 293498 10303451 ~ 10375462 (-)
G48569 NA non-coding downstream 369081 10299544 ~ 10299879 (-)
G48522 NA non-coding downstream 644967 10023128 ~ 10023993 (-)
LOC120558410 NA non-coding upstream 46996 10834886 ~ 10865045 (-)
G48749 NA non-coding upstream 361184 11149074 ~ 11149382 (-)
G48756 NA non-coding upstream 420504 11208394 ~ 11208617 (-)
G48761 NA non-coding upstream 433107 11220997 ~ 11221479 (-)
G48891 NA non-coding upstream 650382 11438272 ~ 11438701 (-)
G48523 NA other downstream 643135 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 883719 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 915274 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 944826 9689729 ~ 9724134 (-)
plekhg5b plekhg5 other downstream 1149505 9427206 ~ 9519455 (-)
LOC120558961 NA other upstream 715937 11503827 ~ 11508337 (-)
srxn1 srxn1 other upstream 1098075 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 1171489 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 1338996 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 1359524 12147414 ~ 12169209 (-)

Expression


Co-expression Network