LOC120558961


Basic Information

Item Value
gene id LOC120558961
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11503827 ~ 11508337 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65275
ACTCATGAGTGCTGCTGGGAGAAAAAGTATAGCGACTAACTCTATTTCACAGACGCAGTTTCAACAGCCACGCACGCAGCTTACATTTCAAATTGAAGTCCGCAAGTTTGCGTTACTTTTCTCCACCTTGACGTCAGCGAACCAGTTTGGTGTGTGACCCGCTCCGCTGCGCCCAGATTCCGATATGGTGCCCTCGCCAACACTCTCCACACATATGAACACAAATGTGACAGAGGTGGTTATTGTTCTCATCCTGCTGACGGTAGCTGCTTTGGGCTTCCTGCTTTACCGGTATCTCTGCCACAACAAAGGAGACTACAGGACGACAGGGGAGGCGGCTCCGGGGGACGACCCCGATGACGAGTACAATAACCAAGCTGCGAGCGAAAAAAAGGAATACTTCATATGAACCTGGTGAAGACTTACAGAGAGTGAGTGGAGAAAGACAAAATGCTCTGTAAAAGACTAAAAAGGACATAGgacggtttttttttttatgcatctGTTTTGAGGGGAGGAACGCGACTTTCTGCACACAgctgttttatattttgttgtgaAAAAAACCGCAGAGGCGCACAAGCAATACCAAAGATAAGATTGTTACAGTAAGAGTGAGTATTATTGATGAATGAGGAGCGGGTGACCGACAACAGGTGTGGGTTGAGATTAGCAGAGCTAGGCATGAAACAGGTGGTGGGATTTTAGTGTGCCACAGTTACAGGATCAGTTAATACTCAGCAGTAAAATGTAAGACGTTTGTCTGCTACACTATTTATCAGCCAAGTTTTAGGCCTCTAGTATTTGCAATACGCCGTTTTATTCAGacagtttttcctttttattttttttttttttacaccaaacAAAACCTTGTGCAAGACGTGTTGTGAAGCCATTGGGGGAAGTTACTTTTATATTGATATGTCTTTTACAGTTATAGTTTTCCTATGCAATTATTTTATAAgcaagttaaaaaaacaaaacaatgtccTCCTTTTGAATTCAGGACAGCCTAAACATTATTTGTTGTATGTGATTGTTGTTGTACCTGGTTTTGTATTATTTCTTGCCAGACATAGTAACGGATGACTTCCCTATTTGAGACAAATATGGAAGGCAATAAAACTTGATTTTGGACTAGTGCCATTGTACAGTGTGACAGCTTACAGTGGTGTTAGATGCATTTCGAAATAGGCAATGTCAGAAGCCCACAATCTGACTTTGAATGGATGATCAATGCACAAAGAGTTGAAATGTTTTAGAGAACATACAGCACATTGCACTGAGTTTGTTGGACACGACTAGCTCCATCCAATATAATCCCATACAACACAGAATCCCACTATAATGAAGCTTATGTTCAGTATTTGTTGACTTTTAAGAGTCGACTGACAACATATTAAGACACCCCTTCGATACATGACAAACCACAGCTTCAAATGATAACAGAATGTGAATTGCAAATCTGACGGCATCCACAAGAACTGAATTTAATAAACTTCATCAAAGGTGCGATTTATTGTGGGTTGTTGGATTAAAATGCAGTGGCTGCGATAAACTGGCGACTCGGTGTAATGCTAGGTGATTGTGACAAAAATACAGATCCATATTTGACTCAATACCTTTTTTATATCAAAGTGACAATATTTTGGTTATTGATTctttcatacagtatgtatactaAACTAAGGT
>XM_039800359.1
TCGAGAGCGTGTGCTCAGCTGCATGACTCACTCATGAGTGCTGCTGGGAGAAAAAGTATAGCGACTAACTCTATTTCACAGACGCAGTTTCAACAGCCACGCACGCAGCTTACATTTCAAATTGAAGTCCGCAAGTTTGCGTTACTTTTCTCCACCTTGACGTCAGCGAACCAGTTTGGTGTGTGACCCGCTCCGCTGCGCCCAGATTCCGATATGGTGCCCTCGCCAACACTCTCCACACATATGAACACAAATGTGACAGAGGCATCAGATATGGGGCCTTTAACATCCCTTCCTACACAAGCAGACACCACCATGATTCAGGCGGTAACAACAGCAGCCCCTGCCAGTCCAGACTCGGCAGTTGTAGCAGTGGTTATTGTTCTCATCCTGCTGACGGTAGCTGCTTTGGGCTTCCTGCTTTACCGGTATCTCTGCCACAACAAAGGAGACTACAGGACGACAGGGGAGGCGGCTCCGGGGGACGACCCCGATGACGAGTACAATAACCAAGCTGCGAGCGAAAAAAAGGAATACTTCATATGAACCTGGTGAAGACTTACAGAGAGTGAGTGGAGAAAGACAAAATGCTCTGTAAAAGACTAAAAAGGACATAGgacggtttttttttttatgcatctGTTTTGAGGGGAGGAACGCGACTTTCTGCACACAgctgttttatattttgttgtgaAAAAAACCGCAGAGGCGCACAAGCAATACCAAAGATAAGATTGTTACAGTAAGAGTGAGTATTATTGATGAATGAGGAGCGGGTGACCGACAACAGGTGTGGGTTGAGATTAGCAGAGCTAGGCATGAAACAGGTGGTGGGATTTTAGTGTGCCACAGTTACAGGATCAGTTAATACTCAGCAGTAAAATGTAAGACGTTTGTCTGCTACACTATTTATCAGCCAAGTTTTAGGCCTCTAGTATTTGCAATACGCCGTTTTATTCAGacagtttttcctttttattttttttttttttacaccaaacAAAACCTTGTGCAAGACGTGTTGTGAAGCCATTGGGGGAAGTTACTTTTATATTGATATGTCTTTTACAGTTATAGTTTTCCTATGCAATTATTTTATAAgcaagttaaaaaaacaaaacaatgtccTCCTTTTGAATTCAGGACAGCCTAAACATTATTTGTTGTATGTGATTGTTGTTGTACCTGGTTTTGTATTATTTCTTGCCAGACATAGTAACGGATGACTTCCCTATTTGAGACAAATATGGAAGGCAATAAAACTTGATTTTGGACTAGTGCCATTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65275 True 1695 lncRNA 0.40 3 11503827 11508308
XM_039800359.1 False 1291 mRNA 0.43 5 11504368 11508337

Neighbor

gene id symbol gene type direction distance location
pou6f1 pou6f1,LOC102796073 coding downstream 5763 11487065 ~ 11498064 (-)
tfcp2 tfcp2 coding downstream 25911 11464498 ~ 11477916 (-)
csrnp2 csrnp2,LOC102795091 coding downstream 39701 11455743 ~ 11464126 (-)
itga5 LOC103365860,LOC103385260 coding downstream 82366 11382182 ~ 11421461 (-)
slc48a1a slc48a1,LOC101074998 coding downstream 143632 11348286 ~ 11360195 (-)
bin2a LOC102783891 coding upstream 2396 11510733 ~ 11518488 (-)
racgap1 racgap1 coding upstream 12984 11521321 ~ 11531078 (-)
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding upstream 71956 11580293 ~ 11585970 (-)
zgc:56699 NA coding upstream 188619 11696956 ~ 11699952 (-)
cd63 NA coding upstream 208282 11716619 ~ 11731081 (-)
G48891 NA non-coding downstream 65126 11438272 ~ 11438701 (-)
G48761 NA non-coding downstream 282348 11220997 ~ 11221479 (-)
G48756 NA non-coding downstream 295210 11208394 ~ 11208617 (-)
G48749 NA non-coding downstream 354445 11149074 ~ 11149382 (-)
LOC120558410 NA non-coding downstream 638782 10834886 ~ 10865045 (-)
G48903 LOC102783589,LOC107599367 non-coding upstream 55734 11564071 ~ 11572989 (-)
G48886 cs non-coding upstream 68202 11576539 ~ 11578988 (-)
G48907 ankrd52 non-coding upstream 91955 11600292 ~ 11600508 (-)
G48910 ankrd52 non-coding upstream 97396 11605733 ~ 11606614 (-)
G48911 NA non-coding upstream 99633 11607970 ~ 11615709 (-)
G48697 NA other downstream 769940 10641405 ~ 10733887 (-)
G48523 NA other downstream 1478002 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1718586 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1750141 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 1779693 9689729 ~ 9724134 (-)
srxn1 srxn1 other upstream 377628 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 451042 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 618549 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 639077 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 712397 12220734 ~ 12223028 (-)

Expression


Co-expression Network