G48886 (cs)


Basic Information

Item Value
gene id G48886
gene name cs
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11576539 ~ 11578988 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65276
CTTTATTTTGTTATCTTGCCCTTTTGACCCATCCAGTCCCCTCCCAAAAGTGTTTCTCTGAATCCAACAGCAATGAATTCTCCCAGTTATCACGTACAACCTTTATGCTCCTCTATGATCAAAATATATATCTCTTGAACAACCCACCACAAGGCGGTACgctacaataaaacacacacacgcgcacctGAAAAAGCCAGAAGAAAGATGGTAGCAGAGAGATTTAAACATCTGAGTGACCTACTGGCTAACACGGCAAGAGCACACGAAAAGAAAGATGCGAGAACTTAAAACTACACACAATTGGAGTGTCGACAAACCCAGAACTTAAGAGCAAGCTTGAAACATTCAAGTGAAACACCTGAAAAAGCACCTGCCCACAGAGCTAGGCAAGAGATCGTGTATATACAAGATAGCTGcggtttttctttttgttcgtTGTCAGAATTTCAGTTCCACGGCCGTGACCAATGAGACTGAACATTACAGTGAGACTGGACACTACTACATTGTTGGTAAACTATTGTCATCATTGTGGTTATTACAAGCAAGTGATCGCTTATACATTCAagctatacatatatatacctatgtacacaaagtataaataaaaaccacaaaatGATAACACAATGATTATACTTTTATACATATTCAAcacccaaaaaaacaacaacaactaaataCTAAAAAAGGGACACAATCAACCTGGGGGTGGGATTTTTACTACTACAAGTTAGGAAATCCAATCAAGCAAGTGCTCCTTTTGGAGTAGTTGTTTAAAGCGCTCTCCTGTGGGGATAAAGTAACAAACATACACTCAAAAAGACAGGACTTTAACAAATACAAAGCCCCCCCATCCCCACTTTTTATTCAAGCTTGCTCTTAAGGATTTACTACAGGCCAATTACAACACCCTTTGCTCGAAATCTTTATGCTATCGTTACCGTTACTGTACATTCGTCTTGATTCTCTATCATTCAGAAGACCCTTTGAGCAGAGAGACCCATTAAAAACAGGAAAGCATGTTAACGAAGAAAAATTTCTTTCTATATAGACAAGACAGTTATTTTGATCATAGAGGCTATACAGGTCATcactaaaaagaagaagaaaaaaaactacaagttGGGGAAAAAATAAGGAGAGACCAAAGATTTAAAGGGGCAGTATCTTTTAACcgattttcatgtttttgagTGTATATCTTGAACAGCTTAGTTAATTTTAGTGGTAAGGGCCTTTATTCTAAACTGGAGTGTTCATAAATGGGAGTGAAACCCGTGGCTAGACTGGGTGGGGTGACATCTGGGGACATTGCATAGAAGAAACTAAGTGCAGTCTGAATtgggaggggggaaaaaaagatgttttgCTTGGGGGATATCCTCTAAAACAAATCTCCACATTAGCCAAAAGTAGCAACGGTTGACTCAGGTATTTCACTTAAGATCTTCAAACGAATACAAAGAAAATTCACTCCCACAAGTCCCTTTGAATGCCACTGCCTATTCATAGTTCAGACCCAGTGCCCAATGACAAACAAGCAGGCACTGCACATAGGGAAATTCTTAGCAATGCTAGCAGACTTAGAATGGTAGAATAGTTTGAGCCTACTATTGGTTACGTGTATATGTGTCGGACGTTTTCACCTCTCATGTTCCTGATGGGGAAAACTTAACTAAACGCACTCAATACGCTAACGGTGTGACGATTTAAAAAGGCCCTTCTTTTGTGAAATGACATTAAAAGCGTACTGTCTCTTTGAATCCCATTGAATCCCTGGGGTTGGAAATgactggggagggggggggggcaacctATGTCTGCTTTTTGATGTTTCCACCTCCTCCCACCCTTCACACTAACCCCCAGCTCTTTTCAGGTGCTTCTTCAGCCTGACTTGGCTCCCACCAGTGTCATCAGTCCATCTGTGCTCATGGACTTGGGGCGCTCCAAGGGGAAGCCCAGGGCTCTACTCCACACCAGCTGAGCCAGCACGCCGAGGGctcgggacacaccgaacagcaCAGTGTAGTAATTCATCTCAGTCATTCCATAGTACTGCAGCAGCACTCCGCTGTGGGCGTCCACATTGGGCCAGGGGTTCTTGGCCTTGCCCTGCTCCAGGAGCACGTTGGGCACAATCTTGTAAAGCTGGGCGACCATCTTGAACATGGGGTCGTTGGGCAGGTGCTTCAGGGCAAACTCACGCTGGCAGGTGTAACGTGGGTCAGTCTTCCTCAGGACAGCATGGCCATAGCCTGGCACGACCTACGAAGAAAGACGGCAACATTTACCTCAACTACTCCTTTTACTACTTGTAATCTTTGCATAGCATTTTTTAGAATAGTTAAg

Function

symbol description
cs Predicted to enable citrate (Si)-synthase activity. Acts upstream of or within response to activity. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Is expressed in brain; gill; heart; and muscle. Orthologous to human CS (citrate synthase).

NR:

description
PREDICTED: citrate synthase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65276 True 2358 lncRNA 0.43 2 11576539 11578988

Neighbor

gene id symbol gene type direction distance location
racgap1 racgap1 coding downstream 45461 11521321 ~ 11531078 (-)
bin2a LOC102783891 coding downstream 58051 11510733 ~ 11518488 (-)
pou6f1 pou6f1,LOC102796073 coding downstream 78475 11487065 ~ 11498064 (-)
tfcp2 tfcp2 coding downstream 98623 11464498 ~ 11477916 (-)
csrnp2 csrnp2,LOC102795091 coding downstream 112413 11455743 ~ 11464126 (-)
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding upstream 1305 11580293 ~ 11585970 (-)
zgc:56699 NA coding upstream 117968 11696956 ~ 11699952 (-)
cd63 NA coding upstream 137631 11716619 ~ 11731081 (-)
ormdl2 ormdl2,LOC101074775,LOC101464341 coding upstream 167319 11746307 ~ 11750609 (-)
spats2 spats2,LOC102777081 coding upstream 205815 11784803 ~ 11806444 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 3550 11564071 ~ 11572989 (-)
G48891 NA non-coding downstream 137838 11438272 ~ 11438701 (-)
G48761 NA non-coding downstream 355060 11220997 ~ 11221479 (-)
G48756 NA non-coding downstream 367922 11208394 ~ 11208617 (-)
G48749 NA non-coding downstream 427157 11149074 ~ 11149382 (-)
G48907 ankrd52 non-coding upstream 21304 11600292 ~ 11600508 (-)
G48910 ankrd52 non-coding upstream 26745 11605733 ~ 11606614 (-)
G48911 NA non-coding upstream 28982 11607970 ~ 11615709 (-)
G49024 NA non-coding upstream 424279 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 540670 12119658 ~ 12121550 (-)
LOC120558961 NA other downstream 68202 11503827 ~ 11508337 (-)
G48697 NA other downstream 842652 10641405 ~ 10733887 (-)
G48523 NA other downstream 1550714 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1791298 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1822853 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 306977 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 380391 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 547898 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 568426 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 641746 12220734 ~ 12223028 (-)

Expression


Co-expression Network