ppdpfa (LOC104933328,LOC101073585)


Basic Information

Item Value
gene id ppdpfa
gene name LOC104933328,LOC101073585
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12220734 ~ 12223028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65587
ACCACTGACCACAGCGGTCACCACAGACACTTCTTCCACAAATGGGCCATTGTAACAACTAGCACCTCGCCTTCTTCAAGCCATCCGCACCTTACAACCGCATCACAATCTTTAAGGTTTCCATTTTCCATCTTTGAGGTGTTTTCTACCTAAGGTCGGAGAAAATGGCAGCAATTCCATCAACTGGCTCCCTCATCGCCACCAATGATTACTATAGAAGGCGCCTTGGGTCCAACTCCAGCAACAGCTCCTGTGGCAGTGCTGAGTACACAGGGGAGGTCATTCCACACCATccagGACTTCCAAGGCAAGATTCTGGCCACTGGTGGACTTCATTTTTCTTGGCAAAACCGAACCAGCCCGGCATGCAGAATGGATCTGACATTCATAAGAACGGAACCTACACAGTGGCTGACGGCCAGGTGACCTGCATTGCCAGGGAAATGGTTATGAAGAGACGACTCAGTGAAAGCAGTGACAATGGAAAGTCTGAAACATCCAACCTTTCACCTACTTCCTCCTAGCCTCCACCCCCTGCCACTGCCTCACCTTCCTGCCGCCTGCTGCCCCCTCTCATCTCCCCTCACCCTCAGCCTGCCATTCATCACATAGTCCATCACTGGAGATCATGATGTCAATGGTGTTTGTTACCTTAGTcagtgctttttttatttttgcctgTATGTATAGTATATTTTTATCATgaccaaaagtaaaaaaaaaaatgtaaaatgttttttcatgtatttttctTGTAACTAcactgttaataataataaatagtcTAAAATATTTGCAG
>XM_039801834.1
CCGGTACTTCTCCTGTCAGCGACAGCACCACTGACCACAGCGGTCACCACAGACACTTCTTCCACAAATGGGCCATTGTAACAACTAGCACCTCGCCTTCTTCAAGCCATCCGCACCTTACAACCGCATCACAATCTTTAAGGTTTCCATTTTCCATCTTTGAGGTGTTTTCTACCTAAGGTCGGAGAAAATGGCAGCAATTCCATCAACTGGCTCCCTCATCGCCACCAATGATTACTATAGAAGGCGCCTTGGGTCCAACTCCAGCAACAGCTCCTGTGGCAGTGCTGAGTACACAGGGGAGGTCATTCCACACCATccagGACTTCCAAGGCAAGATTCTGGCCACTGGTGGACTTCATTTTTCTTGGCAAAACCGAACCAGCCCGGCATGCAGAATGGATCTGACATTCATAAGAACGGAACCTACACAGTGGCTGACGGCCAGGTGACCTGCATTGCCAGGGAAATGGTTATGAAGAGACGACTCAGTGAAAGCAGTGACAATGGAAAGTCTGAAACATCCAACCTTTCACCTACTTCCTCCTAGCCTCCACCCCCTGCCACTGCCTCACCTTCCTGCCGCCTGCTGCCCCCTCTCATCTCCCCTCACCCTCAGCCTGCCATTCATCACATAGTCCATCACTGGAGATCATGATGTCAATGGTGTTTGTTACCTTAGTcagtgctttttttatttttgcctgTATGTATAGTATATTTTTATCATgaccaaaagtaaaaaaaaaaatgtaaaatgttttttcatgtatttttctTGTAACTAcactgttaataataataaatagtcTAAAATATTTGCAGTCA

Function

NR:

description
PREDICTED: pancreatic progenitor cell differentiation and proliferation factor-like

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0008283 cell population proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65587 False 799 TUCP 0.46 5 12220737 12223002
XM_039801834.1 True 828 mRNA 0.46 5 12220734 12223028

Neighbor

gene id symbol gene type direction distance location
LOC120559362 LOC102786474,LOC103354471 coding downstream 101588 12103891 ~ 12119146 (-)
LOC120559249 ptpn1 coding downstream 221289 11986410 ~ 11999445 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding downstream 263343 11953175 ~ 11957391 (-)
slc52a3 slc52a3 coding downstream 275224 11940260 ~ 11945510 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 313121 11898818 ~ 11907613 (-)
LOC120558333 NA coding upstream 1276 12224304 ~ 12230288 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 10077 12233105 ~ 12237737 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding upstream 36969 12259997 ~ 12270531 (-)
nkain5 LOC103354565,LOC101477820 coding upstream 48459 12271487 ~ 12280037 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding upstream 83230 12306258 ~ 12323341 (-)
G49118 NA non-coding downstream 7193 12211743 ~ 12213541 (-)
G49112 NA non-coding downstream 73701 12146728 ~ 12147033 (-)
G49092 NA non-coding downstream 79320 12140935 ~ 12141414 (-)
G49084 NA non-coding downstream 99184 12119658 ~ 12121550 (-)
G49024 NA non-coding downstream 157479 12003267 ~ 12063255 (-)
G49115 NA non-coding upstream 20174 12243202 ~ 12244833 (-)
LOC120558423 NA non-coding upstream 128399 12351427 ~ 12368708 (-)
G49178 NA non-coding upstream 148793 12371821 ~ 12373308 (-)
G49177 LOC108232018 non-coding upstream 152309 12375337 ~ 12375562 (-)
G49179 NA non-coding upstream 153260 12376288 ~ 12376976 (-)
dnmt3ba NA other downstream 51525 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 92309 12126886 ~ 12128425 (-)
peds1 LOC104919928,LOC103354371 other downstream 241699 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 329595 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 712397 11503827 ~ 11508337 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 165953 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 192575 12415603 ~ 12439909 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 701430 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 1027958 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 1085332 13308360 ~ 13312729 (-)

Expression


Co-expression Network