G49183 (snph)


Basic Information

Item Value
gene id G49183
gene name snph
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12383502 ~ 12387224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65658
agcatattttattttccaagAAGAGAGGAAATACCCAGGGTATTTGGCAATATTCTGTTTCTTGTGGAATTTAAGTACAGTTAATTGCCATTTCATTGCTTTTGCATGTACGGTACAAGGTGATGGGAGGTCTAGTTTCACATGGAGAAGGATAAGTGACATCGAGCAATTTAGAACGTGAAGGAAATGTAGTTGCACTGGAACCAAAGTCTAACAAATTTAAAATAGTGAGAAGTTCAAACAATATGGCATGCTCCAACCATAGATACgttatagtttttattttccattgaagTTTGAATTTGACAGCTATTCTTCTGCCTTAAGCTTAATCATTGATTAAACAACCAGCAAAACCTCGTTGGAAAGTTCCCTGAAAGCTTTTTTGCATAAAAAGGCTGACATCGGTAACCACACATACTTCACATCATAGTTTACAATCGAGCCATTTCGGTTGAAACACAAAAAGTCAACTTGTAAGGTGAGTATTCACAACTATGATACATACACTACATTATTATAAACTGCAATACAGTGCTGTGAAAACAACCTACACTGACACAAAGTGTCTTTACTTGCAGCTGCACAAAGATAATTTAAAATTAGAAAATATATCCCTGTATCAAAAAAGTTATTTCTTCATAAAGTCCGTAAACAAAACAGCTCATCGCGTCCTTCATTCAGCTGTGTGGATCACAATCTACTGTATGCTCTTATCTCCTATAAGCTTTATAGAATTATGTAACTGTAGATACACGACCAGATGAGGCATTTCAGGACTGGAGCAGTGGAACTCATGTGCATATGAATGCCCTGCTCACACACCCGCCTCTAGGCtttatttttgattttctttattttcaggttcattgaTACATAATAGATTTTAGCAAGCAAAGAAAATAATGTTGAGGGTAAATGTCCCGACAGGAAGAAAAAGAGTCTGCACAGTTTTAAACTCCCACGTTTTGTTTATTGGCAAAAATATCAATAACCTGTCTGTTCTGCACCTGAGAACTAGATTTAATGCACATGCTTTTCAAAAGGTAAAAGTCCCAACAGCTTTCAACCACAGTCGATATTTTCATGTGTGTAAAAAACTTTGCTGCCTACACTCACTGTGCTCTTTAAATCTATGAACTACTTCAGAACAAGTCAGACGTACTGactgtaatttatttttctgatttttgcggaacattttcatttcatatttcattAATGTGACTCTCCCTTTCCCTTTTAAccaatttcttttaaaaatgtgatgATAAAAATAGAGGAACATTTAACTTGAGACAATTCTCTTTTGCTTCTTTTCATAACATTTAGTGAATATCTTTGCCCAGAGGATATCATCTAAATCCTGGTAGGGGATTTTAATTCAAGCAAGAGAACCCAACCAAACTGTGGGTTACATGCAAATTCCAATAAAGAGACAACCACTTAATCTGCAGGCAGTAGCAGTAAGTGTATTTGAGTAATGAAATAATGGACAACTAATCCTTTGTTTTCTAAGGCAAGGCATGACCACAAAATCACAAGGGCATTATGTAAAACCTAGAAATCTTATAAGAGATATCCAACACACGGCATAGCCAAACTGTAATAAAGTCAGCATTGCTGTGGCTGTGCCTGCAGAGGTTGGGAGTTGTAATCTTTATGTCAGAGAGAGCAAGAAAGTCTTAGATCGGCGTTGTTCCATTCATGCTGATAGGCCTGCGTCCTCTGCCTGCACCCCGGCGGCGCAGCGAGTGAAGAGCCACAGCACAGCAACCTCTCAGCAGGGAGCCAATATGATACACCGGCATGACTTCCCGTGGCCCCCCTCGACACAGCCACGCCATGGTTGGCACCACTGGCATCGCCAACGCCAACAGATCTACGAGGAAGTACCGGCTCCAGTGGCAGAGCTGAGGGGAATACCCATCTTCATTTGTACCTTCGGCTTCATCCTCATGGTCCTCTTCTATCTCCACTACTACAGCGTCCTGCCTCTCTGGGAGTGGAGCTATAGGGTGGGGTTGGCAGCTGTGGGGCTCTCCTGGCATCTTTGTTACCTCCTCTGGTCTGTCGGGTGGTAGTGGCTCTACGCCGTAGGAATGCTCAGGAGGGAACGCAGCAGGTAAAGACGATGGAAAGCGATGGGGTTCTGAAGGGGTGATGTCTGCTGTGGCTAAAGAAATGATACTCAGCTCTTGGACACCGCTTTCCTCACACAGCCAGGTCATGGTCGGGCTGCAGGCCTGGGAGCGCACCTCTGGCTTCTTCTCCGCTGCAGGAGAAGGAGTAGGGATGGGCTTGGTAGCAGGGACAGCTGCAGTTGCAGTTGTTACTGGGGCCTCCTCCTGAGGTAAATGCAGGAACAAGTGATGGTGGGGGGGGTAGGTGTGGCCACTGCACTTGCAGCTGCTACTGAGACTGTGGCAGGAGTGTGAGATCGGCAACACCGCTCCCCCACTGCACAGCCTTTCGTAGGTGGAAGAGCGTGGCACAGCTGGGGGGCCTCGGATGCGGGTTTGTGGGGGCAGCTGCTCTGATAGGAGGGCCGCCTCCAGGAGCAGGTGGGTTTGTCCCGCCGGGCGAGACTCTCTGCTTGACTCGGGAGCGTTCGAGCTGCGCTCCAAATGCAGAGCCTCGCTGCTCAGTCGGGTGTGGGTGGTGCTGCTGCGACTCAAAGTGCTGGCTGGGGAACAACCACAGGAGCGAGACCTCCCCCCTGGCCGAGCTCCCTGCAACCCTGAGTATGGCTTGTGCGTGTCATGGGGGTCTTGTTCGCGGACACTCAGGTTGGACCTCACTGTCTCAACCACCTCCTGAAGGTGCTGGATCTCCTTGCGAGCCTCTTTCAGGGCTAACTGGGCCTCCACACGGTGACATTCCTCCTCTATCCAGTCTTCCTGCATCCTGTACAGTTGGCTCCTCAACTCATCTATTTCACAGTCTCTGTGTTGTAGTCTTTCCACATTGTCCCTCAGTCTGGCTCGCAGATGTCGTATACACACCTCCTTCTGTTGCAGAGGGGTAAGGTACTGCTCCGGGGTCGGGGGCCTGATCCCATGGTTGTCACTGCATGCTGTGTGCTTTGCCTGACGCCTGGGTGTACTAGGATGCGTCCGGGCTGTGGGGCTGCCCTCCGCTGCCCTAACCCGACCGGGATAGGTGTGGATACTGGATGCATCACTGTGGGAACATCGCACGCTGCCGCCGCCACCAGTGCCCACTGAGCGCCTTGAAGGTAGAGATAACATTAAACTTATTTACAATACAGTGAGAAGTCCCAAAATCAAAAATGTCCGATCTTTGGCATCATTCTGAAACTACAGGTGTGTGAGAAGGACGTAACGGTACCTGCGCTGACCTGAGGAGGGCTTTCGACTCGGAGTGAGAGACATTGATGTGCAAGGGACCTCCGATCTTTCCACAGCTGTCTCTAGATAGGGACGCTAGGAGCCCTCACAGCTGCAGCGTAAGAGCCGT

Function

symbol description
snph Predicted to enable syntaxin-1 binding activity. Predicted to be involved in neuron differentiation. Located in cytoplasmic microtubule.

NR:

description
liprin-beta-2-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65658 True 3480 lncRNA 0.47 3 12383502 12387224

Neighbor

gene id symbol gene type direction distance location
samd10a LOC105935172,LOC103139076,LOC103354595,LOC107095944 coding downstream 51510 12323485 ~ 12331992 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding downstream 60161 12306258 ~ 12323341 (-)
nkain5 LOC103354565,LOC101477820 coding downstream 103465 12271487 ~ 12280037 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding downstream 112971 12259997 ~ 12270531 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding downstream 145765 12233105 ~ 12237737 (-)
mfsd2al2 LOC102788240,LOC103355362,LOC102198151 coding upstream 5031 12392255 ~ 12410148 (-)
fam110a NA coding upstream 24997 12412221 ~ 12415372 (-)
plp2 LOC106572444 coding upstream 52793 12440017 ~ 12449668 (-)
sypb syp,LOC104932998 coding upstream 65263 12452487 ~ 12468003 (-)
LOC120559913 cacna1f coding upstream 81476 12468700 ~ 12493767 (-)
G49180 NA non-coding downstream 2717 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 6526 12376288 ~ 12376976 (-)
G49177 LOC108232018 non-coding downstream 7940 12375337 ~ 12375562 (-)
G49178 NA non-coding downstream 10194 12371821 ~ 12373308 (-)
LOC120558423 NA non-coding downstream 14794 12351427 ~ 12368708 (-)
LOC120558434 kdm5c,LOC101072313 non-coding upstream 217656 12604880 ~ 12661242 (-)
G49307 NA non-coding upstream 313205 12700429 ~ 12704105 (-)
G49372 NA non-coding upstream 381596 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 388693 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 450296 12837520 ~ 12839132 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 160474 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 214293 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 255077 12126886 ~ 12128425 (-)
peds1 LOC104919928,LOC103354371 other downstream 404467 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 492363 11885965 ~ 11891139 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 1757 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 28379 12415603 ~ 12439909 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 537234 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 863762 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 921136 13308360 ~ 13312729 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010137 sybu coding NC_007127.7 CM002900.2 39146696 ~ 39168840 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_01224759_01234682 NA coding CI01000016 null 1224136 ~ 1234682 (-)