LOC120558434 (kdm5c,LOC101072313)


Basic Information

Item Value
gene id LOC120558434
gene name kdm5c,LOC101072313
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12604880 ~ 12661242 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65777
TGGTGCTCTTTCTCGAAGGGGCCCCAGTGACAGAGCCATTCACAAGCACGGGCCATAAATGACCGAGTTGAACACCACATTAAGCACTGCATTCTCAGAAATCTGAACTGACTGGAGCACAGCCAAAATGCCAGGAACAAAAGGTAATAAGTCGGACAAGAAGTCAGCTACCAAGCAACCTCAGAGTCCTAAAGAGCAGCCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAGAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCATTTGTGAAGATGGCTTTGGAGACACTGCTTGGGTCCTGCCGTCGTAAACATGGGAGCCCCCGGGGCAAACAGGGCTGAGTGCACCTTCCTTCTGCACTTTCCGAGCCTGCAGACTAGGCTGTTGTGCAGCCTTATAATACAGCATCTGCTCACCTCTCACAGAGGCAGAAAGTGAACCTGATCTCCATCCATCACCATCTGTTGTTCAACCCACCCTCCCAACCTTTTTCTGCCCCCTTCCCCACACTGTCCACTCTGGCTTATTAGATGCTCAAAAATAGACTCCAGGTTAAACCGGACCATTGCTTTGAgcgaaaaaataattttgtcaTCCCATTGCAATCCTTCCCTAACTCACCCTCATGCCACGATCGACTGTCTAACAGTCCATACATCCTTcttgtaaataataattaaaacaacTATTTCTTACCGCAaaaaaaaaaaaaaaacctgcggCAGCTGAAATGTTGTATGGTTTGACTGGTTTGTCTTACCTTTGTTCTAGGCAGATCTGTGCTTTCTCCTCCCAACGTTCTGCAATTGTGAGCAGCTCCTGAAGCTCTGCCATGGCCGTCTCCACAGACACACTCTGGGGCACGTTGCAGCCGGCTTCCATCAGGTTTCTCAAAACATCCAACATCACCTCCTGCCTCTCCCCTCCTTCTGTGCCCAGGGTGCGTCTCACCTCTGCCAGCCAATGGCCCTGCTCCTTAAGGCCCTGGAGTAAATTATACTCTGGCACCACAACAAGCAGCTTGGCCCCCTGCTCCAACAAAGTCTGCAACTGCTCAGGTGTTTGAGAGTCCCTCCTCCAGTCCCTGTCATTGGCCAGTACTTGAGCCCGGCTCTGGAAATCCTCCACTGTCCGCAGAACCGCCTTGAAAACCAGATGGTACAGAGGTAGACCGTCAGTGCACCAAGTGGGGGTACAACTTTTAAGGTGAGAAAATTGTAACACATTTATACagtgtttttattagttttggaaggatatgacaaaaataaaagctAGTTTGCTTAGTGTAACATAACCACTTACCTGCACTTCCTCCAACTGGCTGATCACACAGGGCAGGTTTTGCATCGTCTCTACCAAGGATTTCAGCTCTGCCAACGTCATCTTACT
>TU65778
TGGTGCTCTTTCTCGAAGGGGCCCCAGTGACAGAGCCATTCACAAGCACGGGCCATAAATGACCGAGTTGAACACCACATTAAGCACTGCATTCTCAGAAATCTGAACTGACTGGAGCACAGCCAAAATGCCAGGAACAAAAGGTAATAAGTCGGACAAGAAGTCAGCTACCAAGCAACCTCAGAGTCCTAAAGAGCAGCCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAGAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCATTTGTGAAGATGGCTTTGGAGACACTGCTTGGGTCCTGCCGTCGTAAACATGGGAGCCCCCGGGGCAAACAGGGCTGAGTGCACCTTCCTTCTGCACTTTCCGAGCCTGCAGACTAGGCTGTTGTGCAGCCTTATAATACAGCATCTGCTCACCTCTCACAGAGGCAGAAAGTGAACCTGATCTCCATCCATCACCATCTGTTGTTCAACCCACCCTCCCAACCTTTTTCTGCCCCCTTCCCCACACTGTCCACTCTGGCTTATTAGATGCTCAAAAATAGACTCCAGGTTAAACCGGACCATTGCTTTGAgcgaaaaaataattttgtcaTCCCATTGCAATCCTTCCCTAACTCACCCTCATGCCACGATCGACTGTCTAACAGTCCATACATCCTTcttgtaaataataattaaaacaacTATTTCTTACCGCAGTCCATGT
>XR_005639121.1
CATGGTGCTCTTTCTCGAAGGGGCCCCAGTGACAGAGCCATTCACAAGCACGGGCCATAAATGACCGAGTTGAACACCACATTAAGCACTGCATTCTCAGAAATCTGAACTGACTGGAGCACAGCCAAAATGCCAGGAACAAAAGGTAATAAGTCGGACAAGAAGTCAGCTACCAAGCAACCTCAGAGTCCTAAAGAGCAGCCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAGAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCATTTGTGAAGATGGCTTTGGAGACACTGCTTGGGTCCTGCCG

Function

symbol description
kdm5c Predicted to enable histone demethylase activity (H3-trimethyl-K4 specific). Acts upstream of or within negative regulation of neuron apoptotic process. Predicted to be active in nucleus. Is expressed in brain; head; muscle; and spinal cord. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Claes-Jensen type. Orthologous to several human genes including KDM5C (lysine demethylase 5C).

NR:

description
PREDICTED: lysine-specific demethylase 5C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65777 True 1410 lncRNA 0.48 5 12604880 12661240
TU65778 False 726 lncRNA 0.48 4 12660048 12661240
XR_005639121.1 False 324 lncRNA 0.49 4 12660452 12661242

Neighbor

gene id symbol gene type direction distance location
gpkow gpkow,LOC103467951 coding downstream 93308 12504401 ~ 12511572 (-)
timm17b timm17b,LOC102791711 coding downstream 105415 12494005 ~ 12499465 (-)
LOC120559913 cacna1f coding downstream 111113 12468700 ~ 12493767 (-)
sypb syp,LOC104932998 coding downstream 136877 12452487 ~ 12468003 (-)
plp2 LOC106572444 coding downstream 155212 12440017 ~ 12449668 (-)
LOC120558433 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 coding upstream 13145 12674387 ~ 12679665 (-)
LOC120558430 NA coding upstream 24044 12685286 ~ 12697057 (-)
wasb was coding upstream 60812 12722054 ~ 12728769 (-)
LOC120559801 slc38a5,LOC104951559 coding upstream 68150 12729392 ~ 12739824 (-)
apex2 apex2 coding upstream 79499 12740741 ~ 12744322 (-)
G49183 snph non-coding downstream 217656 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 224095 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 227904 12376288 ~ 12376976 (-)
G49177 LOC108232018 non-coding downstream 229318 12375337 ~ 12375562 (-)
G49178 NA non-coding downstream 231572 12371821 ~ 12373308 (-)
G49307 NA non-coding upstream 39187 12700429 ~ 12704105 (-)
G49372 NA non-coding upstream 107578 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 114675 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 176278 12837520 ~ 12839132 (-)
G49407 NA non-coding upstream 259759 12921001 ~ 12924328 (-)
prickle3 prickle3,LOC102790576 other downstream 164971 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 213203 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 381852 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 435671 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 476455 12126886 ~ 12128425 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 263216 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 589744 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 647118 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 745543 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1086161 13747403 ~ 13753866 (-)

Expression


Co-expression Network